Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1514 ATGCTTCATTCCGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGAAGTTGATGAGGATAAGTTGAGATATCCATTTCCGGAATTAGTTTCTTCTGGACGATTGGAGGTTCGAGTTTTGGCAAATCCGAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTACCGAGCTTTGTCTACTTGCAAGGGGAACAACTCGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCCTGAAGATTTATGTGGACTATTCAATACTGCACTACCAACCATTGTGTATTTAGAAATTCCTAATGGAGGCAGAATAGCAGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTTATTGTATGGGGGGCAATTATTGTCTGCCTGGGATTGCTGATGACAGTATTATGAGTGATCTAGAGCCACAGCTTGTTGGGGAACCCCTAAAGATTAACGTAGAACCCCCCCAGGTAGATGCAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCAGCCATAAGTATTCATGACAATAATGTAACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATGCCTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCGCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGAGTTGTGACAATGAGGTGTGATATGGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCGCTCATACTTGTTTTGATGATCAGCTCTTGGAGAAACATCTCAAGCGTGAGATTATAGAAAATAACCAGTTAGTTCATGCCATGCACAACTGTGAGGGCAACAAACCTCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCTATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATATGTCATATCGGAGTTTAGTTGCACTCGGTATTGGGGGAGTTCAGGGTTTACCTGTTGCTTCTTTTGAGAAAGAAGATGCCGAGCGATTGCTCTTCTTTTGTTCAGGGGATGAGAATGATAAACATTCAGAGCAGTTACTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAAAGTAGAACCAAGCCAAGGAATAAGAAGCACTCTTTCACATGACAGTCCTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTCAAGGCACCCATACTCCCAACGAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGTATGAATAGGAATAAAATGATGCCTTTCTCTGGATTGACTGAAGTAGATGGGAATAACGGAGGCCTATCCAAGGGTAGTTTACCCGTTGTTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAGAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTGAACCCACTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCATGATTGCTCAGAGGGAGAGTTCTTGAAAGATGTTATGGAGTTTTTACTGCTTAGAGGACATTCACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCTATACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCACGATGATGTAGATGGAGAATGCTGCCTTTTGTGCCATAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGCGGTGAATGGGCCCATTTCGGGTGCGATCGAAGGCAGGGTCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTTTTTGGCCTCCCCATCTCGAGATGAGTTTTGTTTGAGGTGGTGTGCTGCTAAACCATTAGGTGAAGGATTGAAGGATGAAAACTTTGAAGTGAAGAAGAGAAGTAAAGAGACTAGAGCACACAAAGAGGACTTCATAATAGGTTTTAATCAAATTCACAAACTGCCTGAAGCAATCGCTTCCTCCTTATCATCCACTTCTCCTTCTAAAGGCCTTTGCGCAATCTGTATGGATGCGAAATCCGCCTCCGAAATGTTCACAAACAGAGTCTGTTCCCATACCTTCTGCACCGATTGCATCTCAAGGCACATCGCCGCAAAGCTTGAGGAGACAATGGCGGTGAAGTGCCCGGAGCCGGAAATGTGCGGAGGTTTGGTTCCGAAAGAGGTGTTGGAGCGTTGGGGGGATGCTCTGTTTGAAGCGATGATTCTGAAGTCGAAGAGATTGAAGTGTCCTTTCAAAGACTGCTCGGCGCCGATGATCGATGAGGGGGATGAGGAGGCGGTGGGGTGTCCGAGTTGTTGGAGAATGTTCTGCGCTCAGTGTAAAGTGGGATGGCATGGGGAAATGGAATGCGGAGAATTTGAGAAACTGCGGAAGGAGGCAGGAGGAAGTGTAGACAGAGACGACGCGGTGACGATGAAACTGGCGGATAAAAGCAAATGGAAGAGATGCCCTAATTGCAAAATTTATGTTGAGAAGACTGAAGGTTGCGTCCCTGTTACCTGCAGGTGTGGATCGGAATTTTGCTACAGCTGTGGAGCTAAGTGGGGTGGTACCCATAATTGTCAATTCTCAGCTTATAAACGTACTGTCTATCGGGATTGA 3099 44.85 MLHSVVAARQTCSLLAVTCGSVPKVKCEEEVDEDKLRYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSPEDLCGLFNTALPTIVYLEIPNGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCMGGNYCLPGIADDSIMSDLEPQLVGEPLKINVEPPQVDAGEGEDEDGSLETLPAISIHDNNVTVRFLICGVPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDMVTCSSAHISILVSGSAHTCFDDQLLEKHLKREIIENNQLVHAMHNCEGNKPHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDENDKHSEQLLVSVLPSWFKPPTPSRKKVEPSQGIRSTLSHDSPAYANIPSIRRVGREEPAPMNGFKAPILPTRKRLKVASMRPVPRMNRNKMMPFSGLTEVDGNNGGLSKGSLPVVTPSKHVTVGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIHDCSEGEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHFLASPSRDEFCLRWCAAKPLGEGLKDENFEVKKRSKETRAHKEDFIIGFNQIHKLPEAIASSLSSTSPSKGLCAICMDAKSASEMFTNRVCSHTFCTDCISRHIAAKLEETMAVKCPEPEMCGGLVPKEVLERWGDALFEAMILKSKRLKCPFKDCSAPMIDEGDEEAVGCPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDAVTMKLADKSKWKRCPNCKIYVEKTEGCVPVTCRCGSEFCYSCGAKWGGTHNCQFSAYKRTVYRD 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29168939 29175985 + CcPI632755_07g015140.1 Cco07g1514 184167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1514 1032 ProSitePatterns Zinc finger RING-type signature. 848 857 IPR017907 -
Cco07g1514 1032 Gene3D - 947 1031 - -
Cco07g1514 1032 Pfam ARID/BRIGHT DNA binding domain 602 697 IPR001606 GO:0003677(InterPro)
Cco07g1514 1032 SMART ARID_2 594 697 - -
Cco07g1514 1032 Pfam Zinc finger, C3HC4 type (RING finger) 830 874 IPR018957 GO:0046872(InterPro)
Cco07g1514 1032 SUPERFAMILY RING/U-box 893 954 - -
Cco07g1514 1032 SMART ibrneu5 889 949 IPR002867 GO:0008270(InterPro)
Cco07g1514 1032 SMART ibrneu5 964 1020 IPR002867 GO:0008270(InterPro)
Cco07g1514 1032 SUPERFAMILY RING/U-box 970 1022 - -
Cco07g1514 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 825 903 IPR013083 -
Cco07g1514 1032 Gene3D - 591 707 IPR036431 GO:0003677(InterPro)
Cco07g1514 1032 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 758 IPR042293 -
Cco07g1514 1032 Pfam IBR domain, a half RING-finger domain 890 949 IPR002867 GO:0008270(InterPro)
Cco07g1514 1032 Pfam IBR domain, a half RING-finger domain 973 1020 IPR002867 GO:0008270(InterPro)
Cco07g1514 1032 CDD Rcat_RBR_unk 978 1014 - -
Cco07g1514 1032 SUPERFAMILY RING/U-box 829 898 - -
Cco07g1514 1032 CDD BRcat_RBR_unk 903 952 - -
Cco07g1514 1032 ProSiteProfiles TRIAD supradomain profile. 826 1029 IPR044066 -
Cco07g1514 1032 SUPERFAMILY ARID-like 598 712 IPR036431 GO:0003677(InterPro)
Cco07g1514 1032 ProSiteProfiles Zinc finger RING-type profile. 830 874 IPR001841 -
Cco07g1514 1032 CDD PHD_ARID4_like 707 756 - -
Cco07g1514 1032 SMART ring_2 830 931 IPR001841 -
Cco07g1514 1032 SMART ring_2 982 1023 IPR001841 -
Cco07g1514 1032 CDD ARID 602 697 - -
Cco07g1514 1032 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
Cco07g1514 1032 MobiDBLite consensus disorder prediction 454 475 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2239 Cco-Chr2:35005476 Cco07g1514 Cco-Chr7:29168939 2.60E-28 dispersed
Cco03g0248 Cco-Chr3:2734877 Cco07g1514 Cco-Chr7:29168939 2.20E-29 dispersed
Cco08g0108 Cco-Chr8:1759955 Cco07g1514 Cco-Chr7:29168939 5.50E-57 transposed
Cco07g1514 Cco-Chr7:29168939 Cco09g0135 Cco-Chr9:1196140 6.10E-291 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59692 PF01388 ARID 3.90E-13 CL0123 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1514 - - - 0.0