Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco07g1514 | ATGCTTCATTCCGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGAAGTTGATGAGGATAAGTTGAGATATCCATTTCCGGAATTAGTTTCTTCTGGACGATTGGAGGTTCGAGTTTTGGCAAATCCGAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTACCGAGCTTTGTCTACTTGCAAGGGGAACAACTCGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCCTGAAGATTTATGTGGACTATTCAATACTGCACTACCAACCATTGTGTATTTAGAAATTCCTAATGGAGGCAGAATAGCAGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTTATTGTATGGGGGGCAATTATTGTCTGCCTGGGATTGCTGATGACAGTATTATGAGTGATCTAGAGCCACAGCTTGTTGGGGAACCCCTAAAGATTAACGTAGAACCCCCCCAGGTAGATGCAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCAGCCATAAGTATTCATGACAATAATGTAACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATGCCTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCGCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGAGTTGTGACAATGAGGTGTGATATGGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCGCTCATACTTGTTTTGATGATCAGCTCTTGGAGAAACATCTCAAGCGTGAGATTATAGAAAATAACCAGTTAGTTCATGCCATGCACAACTGTGAGGGCAACAAACCTCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCTATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATATGTCATATCGGAGTTTAGTTGCACTCGGTATTGGGGGAGTTCAGGGTTTACCTGTTGCTTCTTTTGAGAAAGAAGATGCCGAGCGATTGCTCTTCTTTTGTTCAGGGGATGAGAATGATAAACATTCAGAGCAGTTACTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAAAGTAGAACCAAGCCAAGGAATAAGAAGCACTCTTTCACATGACAGTCCTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTCAAGGCACCCATACTCCCAACGAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGTATGAATAGGAATAAAATGATGCCTTTCTCTGGATTGACTGAAGTAGATGGGAATAACGGAGGCCTATCCAAGGGTAGTTTACCCGTTGTTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAGAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTGAACCCACTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCATGATTGCTCAGAGGGAGAGTTCTTGAAAGATGTTATGGAGTTTTTACTGCTTAGAGGACATTCACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCTATACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCACGATGATGTAGATGGAGAATGCTGCCTTTTGTGCCATAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGCGGTGAATGGGCCCATTTCGGGTGCGATCGAAGGCAGGGTCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTTTTTGGCCTCCCCATCTCGAGATGAGTTTTGTTTGAGGTGGTGTGCTGCTAAACCATTAGGTGAAGGATTGAAGGATGAAAACTTTGAAGTGAAGAAGAGAAGTAAAGAGACTAGAGCACACAAAGAGGACTTCATAATAGGTTTTAATCAAATTCACAAACTGCCTGAAGCAATCGCTTCCTCCTTATCATCCACTTCTCCTTCTAAAGGCCTTTGCGCAATCTGTATGGATGCGAAATCCGCCTCCGAAATGTTCACAAACAGAGTCTGTTCCCATACCTTCTGCACCGATTGCATCTCAAGGCACATCGCCGCAAAGCTTGAGGAGACAATGGCGGTGAAGTGCCCGGAGCCGGAAATGTGCGGAGGTTTGGTTCCGAAAGAGGTGTTGGAGCGTTGGGGGGATGCTCTGTTTGAAGCGATGATTCTGAAGTCGAAGAGATTGAAGTGTCCTTTCAAAGACTGCTCGGCGCCGATGATCGATGAGGGGGATGAGGAGGCGGTGGGGTGTCCGAGTTGTTGGAGAATGTTCTGCGCTCAGTGTAAAGTGGGATGGCATGGGGAAATGGAATGCGGAGAATTTGAGAAACTGCGGAAGGAGGCAGGAGGAAGTGTAGACAGAGACGACGCGGTGACGATGAAACTGGCGGATAAAAGCAAATGGAAGAGATGCCCTAATTGCAAAATTTATGTTGAGAAGACTGAAGGTTGCGTCCCTGTTACCTGCAGGTGTGGATCGGAATTTTGCTACAGCTGTGGAGCTAAGTGGGGTGGTACCCATAATTGTCAATTCTCAGCTTATAAACGTACTGTCTATCGGGATTGA | 3099 | 44.85 | MLHSVVAARQTCSLLAVTCGSVPKVKCEEEVDEDKLRYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSPEDLCGLFNTALPTIVYLEIPNGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCMGGNYCLPGIADDSIMSDLEPQLVGEPLKINVEPPQVDAGEGEDEDGSLETLPAISIHDNNVTVRFLICGVPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDMVTCSSAHISILVSGSAHTCFDDQLLEKHLKREIIENNQLVHAMHNCEGNKPHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDENDKHSEQLLVSVLPSWFKPPTPSRKKVEPSQGIRSTLSHDSPAYANIPSIRRVGREEPAPMNGFKAPILPTRKRLKVASMRPVPRMNRNKMMPFSGLTEVDGNNGGLSKGSLPVVTPSKHVTVGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIHDCSEGEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHFLASPSRDEFCLRWCAAKPLGEGLKDENFEVKKRSKETRAHKEDFIIGFNQIHKLPEAIASSLSSTSPSKGLCAICMDAKSASEMFTNRVCSHTFCTDCISRHIAAKLEETMAVKCPEPEMCGGLVPKEVLERWGDALFEAMILKSKRLKCPFKDCSAPMIDEGDEEAVGCPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDAVTMKLADKSKWKRCPNCKIYVEKTEGCVPVTCRCGSEFCYSCGAKWGGTHNCQFSAYKRTVYRD | 1032 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 29168939 | 29175985 | + | CcPI632755_07g015140.1 | Cco07g1514 | 184167 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco07g1514 | 1032 | ProSitePatterns | Zinc finger RING-type signature. | 848 | 857 | IPR017907 | - | |
Cco07g1514 | 1032 | Gene3D | - | 947 | 1031 | - | - | |
Cco07g1514 | 1032 | Pfam | ARID/BRIGHT DNA binding domain | 602 | 697 | IPR001606 | GO:0003677(InterPro) | |
Cco07g1514 | 1032 | SMART | ARID_2 | 594 | 697 | - | - | |
Cco07g1514 | 1032 | Pfam | Zinc finger, C3HC4 type (RING finger) | 830 | 874 | IPR018957 | GO:0046872(InterPro) | |
Cco07g1514 | 1032 | SUPERFAMILY | RING/U-box | 893 | 954 | - | - | |
Cco07g1514 | 1032 | SMART | ibrneu5 | 889 | 949 | IPR002867 | GO:0008270(InterPro) | |
Cco07g1514 | 1032 | SMART | ibrneu5 | 964 | 1020 | IPR002867 | GO:0008270(InterPro) | |
Cco07g1514 | 1032 | SUPERFAMILY | RING/U-box | 970 | 1022 | - | - | |
Cco07g1514 | 1032 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 825 | 903 | IPR013083 | - | |
Cco07g1514 | 1032 | Gene3D | - | 591 | 707 | IPR036431 | GO:0003677(InterPro) | |
Cco07g1514 | 1032 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 | 7 | 758 | IPR042293 | - | |
Cco07g1514 | 1032 | Pfam | IBR domain, a half RING-finger domain | 890 | 949 | IPR002867 | GO:0008270(InterPro) | |
Cco07g1514 | 1032 | Pfam | IBR domain, a half RING-finger domain | 973 | 1020 | IPR002867 | GO:0008270(InterPro) | |
Cco07g1514 | 1032 | CDD | Rcat_RBR_unk | 978 | 1014 | - | - | |
Cco07g1514 | 1032 | SUPERFAMILY | RING/U-box | 829 | 898 | - | - | |
Cco07g1514 | 1032 | CDD | BRcat_RBR_unk | 903 | 952 | - | - | |
Cco07g1514 | 1032 | ProSiteProfiles | TRIAD supradomain profile. | 826 | 1029 | IPR044066 | - | |
Cco07g1514 | 1032 | SUPERFAMILY | ARID-like | 598 | 712 | IPR036431 | GO:0003677(InterPro) | |
Cco07g1514 | 1032 | ProSiteProfiles | Zinc finger RING-type profile. | 830 | 874 | IPR001841 | - | |
Cco07g1514 | 1032 | CDD | PHD_ARID4_like | 707 | 756 | - | - | |
Cco07g1514 | 1032 | SMART | ring_2 | 830 | 931 | IPR001841 | - | |
Cco07g1514 | 1032 | SMART | ring_2 | 982 | 1023 | IPR001841 | - | |
Cco07g1514 | 1032 | CDD | ARID | 602 | 697 | - | - | |
Cco07g1514 | 1032 | ProSiteProfiles | ARID domain profile. | 597 | 701 | IPR001606 | GO:0003677(InterPro) | |
Cco07g1514 | 1032 | MobiDBLite | consensus disorder prediction | 454 | 475 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2239 | Cco-Chr2:35005476 | Cco07g1514 | Cco-Chr7:29168939 | 2.60E-28 | dispersed | |
Cco03g0248 | Cco-Chr3:2734877 | Cco07g1514 | Cco-Chr7:29168939 | 2.20E-29 | dispersed | |
Cco08g0108 | Cco-Chr8:1759955 | Cco07g1514 | Cco-Chr7:29168939 | 5.50E-57 | transposed | |
Cco07g1514 | Cco-Chr7:29168939 | Cco09g0135 | Cco-Chr9:1196140 | 6.10E-291 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59692 | PF01388 | ARID | 3.90E-13 | CL0123 | Cco | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco07g1514 | - | - | - | 0.0 |