Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1514 ATGCTTCATTCCGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGAAGTTGATGAGGATAAGTTGAGATATCCATTTCCGGAATTAGTTTCTTCTGGACGATTGGAGGTTCGAGTTTTGGCAAATCCGAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTACCGAGCTTTGTCTACTTGCAAGGGGAACAACTCGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCCTGAAGATTTATGTGGACTATTCAATACTGCACTACCAACCATTGTGTATTTAGAAATTCCTAATGGAGGCAGAATAGCAGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTTATTGTATGGGGGGCAATTATTGTCTGCCTGGGATTGCTGATGACAGTATTATGAGTGATCTAGAGCCACAGCTTGTTGGGGAACCCCTAAAGATTAACGTAGAACCCCCCCAGGTAGATGCAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCAGCCATAAGTATTCATGACAATAATGTAACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATGCCTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCGCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGAGTTGTGACAATGAGGTGTGATATGGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCGCTCATACTTGTTTTGATGATCAGCTCTTGGAGAAACATCTCAAGCGTGAGATTATAGAAAATAACCAGTTAGTTCATGCCATGCACAACTGTGAGGGCAACAAACCTCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCTATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATATGTCATATCGGAGTTTAGTTGCACTCGGTATTGGGGGAGTTCAGGGTTTACCTGTTGCTTCTTTTGAGAAAGAAGATGCCGAGCGATTGCTCTTCTTTTGTTCAGGGGATGAGAATGATAAACATTCAGAGCAGTTACTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAAAGTAGAACCAAGCCAAGGAATAAGAAGCACTCTTTCACATGACAGTCCTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTCAAGGCACCCATACTCCCAACGAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGTATGAATAGGAATAAAATGATGCCTTTCTCTGGATTGACTGAAGTAGATGGGAATAACGGAGGCCTATCCAAGGGTAGTTTACCCGTTGTTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAGAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTGAACCCACTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCATGATTGCTCAGAGGGAGAGTTCTTGAAAGATGTTATGGAGTTTTTACTGCTTAGAGGACATTCACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCTATACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCACGATGATGTAGATGGAGAATGCTGCCTTTTGTGCCATAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGCGGTGAATGGGCCCATTTCGGGTGCGATCGAAGGCAGGGTCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTTTTTGGCCTCCCCATCTCGAGATGAGTTTTGTTTGAGGTGGTGTGCTGCTAAACCATTAGGTGAAGGATTGAAGGATGAAAACTTTGAAGTGAAGAAGAGAAGTAAAGAGACTAGAGCACACAAAGAGGACTTCATAATAGGTTTTAATCAAATTCACAAACTGCCTGAAGCAATCGCTTCCTCCTTATCATCCACTTCTCCTTCTAAAGGCCTTTGCGCAATCTGTATGGATGCGAAATCCGCCTCCGAAATGTTCACAAACAGAGTCTGTTCCCATACCTTCTGCACCGATTGCATCTCAAGGCACATCGCCGCAAAGCTTGAGGAGACAATGGCGGTGAAGTGCCCGGAGCCGGAAATGTGCGGAGGTTTGGTTCCGAAAGAGGTGTTGGAGCGTTGGGGGGATGCTCTGTTTGAAGCGATGATTCTGAAGTCGAAGAGATTGAAGTGTCCTTTCAAAGACTGCTCGGCGCCGATGATCGATGAGGGGGATGAGGAGGCGGTGGGGTGTCCGAGTTGTTGGAGAATGTTCTGCGCTCAGTGTAAAGTGGGATGGCATGGGGAAATGGAATGCGGAGAATTTGAGAAACTGCGGAAGGAGGCAGGAGGAAGTGTAGACAGAGACGACGCGGTGACGATGAAACTGGCGGATAAAAGCAAATGGAAGAGATGCCCTAATTGCAAAATTTATGTTGAGAAGACTGAAGGTTGCGTCCCTGTTACCTGCAGGTGTGGATCGGAATTTTGCTACAGCTGTGGAGCTAAGTGGGGTGGTACCCATAATTGTCAATTCTCAGCTTATAAACGTACTGTCTATCGGGATTGA 3099 44.85 MLHSVVAARQTCSLLAVTCGSVPKVKCEEEVDEDKLRYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSPEDLCGLFNTALPTIVYLEIPNGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCMGGNYCLPGIADDSIMSDLEPQLVGEPLKINVEPPQVDAGEGEDEDGSLETLPAISIHDNNVTVRFLICGVPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDMVTCSSAHISILVSGSAHTCFDDQLLEKHLKREIIENNQLVHAMHNCEGNKPHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSGDENDKHSEQLLVSVLPSWFKPPTPSRKKVEPSQGIRSTLSHDSPAYANIPSIRRVGREEPAPMNGFKAPILPTRKRLKVASMRPVPRMNRNKMMPFSGLTEVDGNNGGLSKGSLPVVTPSKHVTVGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIHDCSEGEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHFLASPSRDEFCLRWCAAKPLGEGLKDENFEVKKRSKETRAHKEDFIIGFNQIHKLPEAIASSLSSTSPSKGLCAICMDAKSASEMFTNRVCSHTFCTDCISRHIAAKLEETMAVKCPEPEMCGGLVPKEVLERWGDALFEAMILKSKRLKCPFKDCSAPMIDEGDEEAVGCPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDAVTMKLADKSKWKRCPNCKIYVEKTEGCVPVTCRCGSEFCYSCGAKWGGTHNCQFSAYKRTVYRD 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29168939 29175985 + CcPI632755_07g015140.1 Cco07g1514 184167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1514 1032 ProSitePatterns Zinc finger RING-type signature. 848 857 IPR017907 -
Cco07g1514 1032 Gene3D - 947 1031 - -
Cco07g1514 1032 Pfam ARID/BRIGHT DNA binding domain 602 697 IPR001606 GO:0003677(InterPro)
Cco07g1514 1032 SMART ARID_2 594 697 - -
Cco07g1514 1032 Pfam Zinc finger, C3HC4 type (RING finger) 830 874 IPR018957 GO:0046872(InterPro)
Cco07g1514 1032 SUPERFAMILY RING/U-box 893 954 - -
Cco07g1514 1032 SMART ibrneu5 889 949 IPR002867 GO:0008270(InterPro)
Cco07g1514 1032 SMART ibrneu5 964 1020 IPR002867 GO:0008270(InterPro)
Cco07g1514 1032 SUPERFAMILY RING/U-box 970 1022 - -
Cco07g1514 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 825 903 IPR013083 -
Cco07g1514 1032 Gene3D - 591 707 IPR036431 GO:0003677(InterPro)
Cco07g1514 1032 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 758 IPR042293 -
Cco07g1514 1032 Pfam IBR domain, a half RING-finger domain 890 949 IPR002867 GO:0008270(InterPro)
Cco07g1514 1032 Pfam IBR domain, a half RING-finger domain 973 1020 IPR002867 GO:0008270(InterPro)
Cco07g1514 1032 CDD Rcat_RBR_unk 978 1014 - -
Cco07g1514 1032 SUPERFAMILY RING/U-box 829 898 - -
Cco07g1514 1032 CDD BRcat_RBR_unk 903 952 - -
Cco07g1514 1032 ProSiteProfiles TRIAD supradomain profile. 826 1029 IPR044066 -
Cco07g1514 1032 SUPERFAMILY ARID-like 598 712 IPR036431 GO:0003677(InterPro)
Cco07g1514 1032 ProSiteProfiles Zinc finger RING-type profile. 830 874 IPR001841 -
Cco07g1514 1032 CDD PHD_ARID4_like 707 756 - -
Cco07g1514 1032 SMART ring_2 830 931 IPR001841 -
Cco07g1514 1032 SMART ring_2 982 1023 IPR001841 -
Cco07g1514 1032 CDD ARID 602 697 - -
Cco07g1514 1032 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
Cco07g1514 1032 MobiDBLite consensus disorder prediction 454 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1514 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2239 Cco-Chr2:35005476 Cco07g1514 Cco-Chr7:29168939 2.60E-28 dispersed
Cco03g0248 Cco-Chr3:2734877 Cco07g1514 Cco-Chr7:29168939 2.20E-29 dispersed
Cco08g0108 Cco-Chr8:1759955 Cco07g1514 Cco-Chr7:29168939 5.50E-57 transposed
Cco07g1514 Cco-Chr7:29168939 Cco09g0135 Cco-Chr9:1196140 6.10E-291 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g0804 . 119 470 ARID Transcription Factor Family AT1G04880 58.4 9.7e-108 387.5
Cco10g0007 . 300 570 ARID Transcription Factor Family AT1G20910 61.4 1.4e-91 333.6
Cco05g1750 . 16 309 ARID Transcription Factor Family AT1G76110 68.1 1.9e-111 399.4
Cco10g0007 . 279 600 ARID Transcription Factor Family AT1G76510 60.2 1.0e-109 394.0
Cco07g1514 . 1 764 ARID Transcription Factor Family AT3G43240 59.1 1.5e-259 892.5
Cco09g0135 . 120 859 ARID Transcription Factor Family AT3G43240 59.2 6.1e-256 880.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59692 PF01388 ARID 3.90E-13 CL0123 Cco TR