Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1542 ATGCAATTGGTACCAAATCATGATGAAAATAAAGATGATATTCTGGAGCGTGCACCCATTTTAAGTCACTTGGATTTTCTGCCACAGTCTGTGGGATCATCATCCTCTGCTGAGATTGCTGAGATTATAGCTATAGGGAGAGAGAGTTCGGTTAGTGATGATGATTTACACAATCTTATTGTTGATGAAACTTGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTGATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTAGGGGTGTTGGTGTACAAATTTTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGATTCTATGCCATGGCTGTCTTAGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCACGTTATGGAGCTAAGGATGTTGGGCCTGTATTAA 789 41.95 MQLVPNHDENKDDILERAPILSHLDFLPQSVGSSSSAEIAEIIAIGRESSVSDDDLHNLIVDETCHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 262
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 29419721 29421481 - CcPI632755_07g015420.1 Cco07g1542 184195
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1542 262 Pfam RING-variant domain 75 122 IPR011016 GO:0008270(InterPro)
Cco07g1542 262 SUPERFAMILY RING/U-box 70 126 - -
Cco07g1542 262 SMART ringv_2 74 123 IPR011016 GO:0008270(InterPro)
Cco07g1542 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 127 IPR013083 -
Cco07g1542 262 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 194 262 - -
Cco07g1542 262 CDD RING_CH-C4HC3_MARCH 75 123 - -
Cco07g1542 262 ProSiteProfiles Zinc finger RING-CH-type profile. 67 129 IPR011016 GO:0008270(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1241 Cco-Chr6:22374794 Cco07g1542 Cco-Chr7:29419721 4.30E-37 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1542 - - - 0.0