Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco07g1542 | ATGCAATTGGTACCAAATCATGATGAAAATAAAGATGATATTCTGGAGCGTGCACCCATTTTAAGTCACTTGGATTTTCTGCCACAGTCTGTGGGATCATCATCCTCTGCTGAGATTGCTGAGATTATAGCTATAGGGAGAGAGAGTTCGGTTAGTGATGATGATTTACACAATCTTATTGTTGATGAAACTTGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTGATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTAGGGGTGTTGGTGTACAAATTTTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGATTCTATGCCATGGCTGTCTTAGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCACGTTATGGAGCTAAGGATGTTGGGCCTGTATTAA | 789 | 41.95 | MQLVPNHDENKDDILERAPILSHLDFLPQSVGSSSSAEIAEIIAIGRESSVSDDDLHNLIVDETCHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY | 262 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 29419721 | 29421481 | - | CcPI632755_07g015420.1 | Cco07g1542 | 184195 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco07g1542 | 262 | Pfam | RING-variant domain | 75 | 122 | IPR011016 | GO:0008270(InterPro) | |
| Cco07g1542 | 262 | SUPERFAMILY | RING/U-box | 70 | 126 | - | - | |
| Cco07g1542 | 262 | SMART | ringv_2 | 74 | 123 | IPR011016 | GO:0008270(InterPro) | |
| Cco07g1542 | 262 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 127 | IPR013083 | - | |
| Cco07g1542 | 262 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 194 | 262 | - | - | |
| Cco07g1542 | 262 | CDD | RING_CH-C4HC3_MARCH | 75 | 123 | - | - | |
| Cco07g1542 | 262 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 67 | 129 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g1241 | Cco-Chr6:22374794 | Cco07g1542 | Cco-Chr7:29419721 | 4.30E-37 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco07g1542 | - | - | - | 0.0 |