Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1549 ATGCCAACGGGCGTGCGCGTGGTGGGGCTTATGCGCGCACCGGCCCCAACCATCAGCGCCGCTTCTCTCATTCTCTTCTTCCTCCTCCTCTCATCTTCATGCATAATGGTGGTGTTATCGGCCTCAGACGCCGAAACACTGCTTCAATTCAAGCGGTCATTGATGTCAGCAGTGGCTCTTAACAACTGGAACCCATCGGTCCCTCCTTGCGAGAACAACAAGGCCAATTGGGCGGGTGTGCTTTGTTTGAATGGACATGTTAGGGGTCTAAGGCTTGAGAATATGGGGCTTAAGGGAGAGGTTGATGTGAATTCGCTGGTTTCTATGACTCGCTTGAGGACGCTGAGCTTCATGAACAACACATTGGTTGGGGGTTGGCCTCGTGTTATAAGCAAATTAGGGAGTCTACGTTCTGTTTATCTTTCCTATAACCATTTTTCAGGACAAATCCCAGACGATGCTTTTGCGGGTATGAAATTTTTGAAGAAAGTGTTTTTGACCAATAATGAATTCAACGGCCCCATTCCCTCATCTCTCGCTTCACTGTCTAGGCTTATGGAGTTGAGACTTGATGGAAACAAATTCAAAGGCCAAGTCCCTCGATTTCAAATCGATACTTTGAAGAAACTTAATGTCTCCAACAATGAATTGGAGGGCCCAATTCCTAGTAGCTTATCCCATATGGATCCTTCTTGCTTTGCAGGTAACCGTGATCTGTGTGGGGATCCTCTACCAGCATGTGGGAGTGCGATATCATCCTCAGGGCTTCTCAAAATCGCAGTGATAGTGATAATTTTGGGGTTAACATTAGCAGTAATAGCTGCAATATTCATCATAATGAATTTAAGGAAGCAGCCAGCAGCGGTGCAACTGGGGAAGGGGAATCCAGGGATCATCATTGAAGAGGATCAGAATGAATATATGAATAATGGTAAGCAAATGACGGCGGGGGCGGGGGCGGGGGATGGATACAGATCGACGGAGTCGTCGGTGGCTCAGGCTCCGAAGAGAGGGGCAGAACATGGGAAACTGTTGTTCGTGAGAGATGATAGGGAGAAGTTCGATTTACAAGACCTGCTAAGGGCGTCGGCGGAGATATTGGGGAGTGGCTCATTCGGGTCTTCTTATAAAGCAACTATACTTTGTAATTCGGTGGTGGTGAAGCGTTACAAGCATATGAACAATGTGGGAAGAGAGGAGTTTCATGAGCATATGAGAAGGTTAGGTAGATTGACGCATGCAAATCTACTCCCTTTGGTTGCATATTATTACAGGAAGGAAGAGAAGCTCTTGATTTCCGACTTTGTGGATAATGGGAGTTTGGCCAGCCATCTGCATGGGAACCACAACCTGGAGGAGGCAGGGCTGGATTGGGCAACTAGATTGAAGATCATCAGAGGAATAGCAAGAGGGTTGTCTTACTTGTACACATCGCTGCCAAACATAGCAGCAGCACATGGGCATCTGAAATCTTCAAATGTGTTACTAGACGAGTCGATGGAGCCTCTGCTGACGGATTACGGTCTAAGCCCAGTAGCGAACCTAGAACAGGGGCAGAGCCTGATGATGGCCTACAAATCCCCAGAGTACGCCCAAATGGGGAGCATAACCAAGAAAACGGACGTGTGGAGCTTCGGAATTGTGATTCTGGAGATGTTGACGGGTAGGTTCCCAGAGAATTACCTAACTCGGAATCACGACACCAAAGCTGACCTGGCGGGTTGGGTCAACAACATGATCAAGGAAAAGAAGACCCCGCAAGTGTTCGACGCAGAGCTAGGGCGAGCCAGGGAGAGCAATAAAGGCGAGTTGCTGAAGATGCTTAAAATTGCATTGAGTTGTTGCGAGGAAGATGTGGATAGAAGGTTGGATCTCAATCAAGTAGTCGCACAAATTGAAGACTTGAACGATGCAGATTTTAGTGATAATGATGATGGAGATAACTTCTCCCCAACTTCTCGCCATTCTCAAATTCCTGTTTGA 1983 47.4 MPTGVRVVGLMRAPAPTISAASLILFFLLLSSSCIMVVLSASDAETLLQFKRSLMSAVALNNWNPSVPPCENNKANWAGVLCLNGHVRGLRLENMGLKGEVDVNSLVSMTRLRTLSFMNNTLVGGWPRVISKLGSLRSVYLSYNHFSGQIPDDAFAGMKFLKKVFLTNNEFNGPIPSSLASLSRLMELRLDGNKFKGQVPRFQIDTLKKLNVSNNELEGPIPSSLSHMDPSCFAGNRDLCGDPLPACGSAISSSGLLKIAVIVIILGLTLAVIAAIFIIMNLRKQPAAVQLGKGNPGIIIEEDQNEYMNNGKQMTAGAGAGDGYRSTESSVAQAPKRGAEHGKLLFVRDDREKFDLQDLLRASAEILGSGSFGSSYKATILCNSVVVKRYKHMNNVGREEFHEHMRRLGRLTHANLLPLVAYYYRKEEKLLISDFVDNGSLASHLHGNHNLEEAGLDWATRLKIIRGIARGLSYLYTSLPNIAAAHGHLKSSNVLLDESMEPLLTDYGLSPVANLEQGQSLMMAYKSPEYAQMGSITKKTDVWSFGIVILEMLTGRFPENYLTRNHDTKADLAGWVNNMIKEKKTPQVFDAELGRARESNKGELLKMLKIALSCCEEDVDRRLDLNQVVAQIEDLNDADFSDNDDGDNFSPTSRHSQIPV 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29522734 29526498 - CcPI632755_07g015490.1 Cco07g1549 184202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1549 660 SUPERFAMILY L domain-like 67 229 - -
Cco07g1549 660 Gene3D Phosphorylase Kinase; domain 1 327 435 - -
Cco07g1549 660 MobiDBLite consensus disorder prediction 637 660 - -
Cco07g1549 660 SUPERFAMILY Protein kinase-like (PK-like) 365 634 IPR011009 -
Cco07g1549 660 FunFam pollen receptor-like kinase 1 330 435 - -
Cco07g1549 660 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Cco07g1549 660 ProSiteProfiles Protein kinase domain profile. 361 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1549 660 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 38 636 IPR046959 -
Cco07g1549 660 Pfam Leucine Rich Repeat 207 228 IPR001611 GO:0005515(InterPro)
Cco07g1549 660 Pfam Leucine Rich Repeat 135 153 IPR001611 GO:0005515(InterPro)
Cco07g1549 660 MobiDBLite consensus disorder prediction 645 660 - -
Cco07g1549 660 FunFam Pollen receptor-like kinase 1 436 646 - -
Cco07g1549 660 Gene3D Ribonuclease Inhibitor 155 248 IPR032675 -
Cco07g1549 660 Pfam Protein tyrosine and serine/threonine kinase 365 631 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1549 660 Gene3D Ribonuclease Inhibitor 42 154 IPR032675 -
Cco07g1549 660 Gene3D Transferase(Phosphotransferase) domain 1 436 652 - -
Cco07g1549 660 Pfam Leucine rich repeat N-terminal domain 41 82 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1549 Cco-Chr7:29522734 Cco08g1412 Cco-Chr8:26049743 1.90E-104 dispersed
Cco01g0209 Cco-Chr1:1983287 Cco07g1549 Cco-Chr7:29522734 3.00E-51 wgd
Cco05g1027 Cco-Chr5:9037388 Cco07g1549 Cco-Chr7:29522734 3.60E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86995 PF07714 PK_Tyr_Ser-Thr 1.80E-30 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1549 K28077 - csv:101203276 1105.51