Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1553 ATGGATTCTTCAATTTCCTCATTCCTTCTGTTCTTTTCCTTTTCCCTTCTCTTCATATTTGGTAATTCCTTCGATTTCTACAGCTCCTGCAGCAGTCTCTTCAACTGCGGCCACATCACCAACGTCGGCTTCCCATTCTGGGGCGACGGAAGGCCTGCCGGCTGCGGCAATCCGGCGCTGCAATTGGCATGCGAAGGAAATAAGACAACGATCGTAATAAAGGAAATCAAATATCAGATTCTCAAATTCAGCGTCGAAAATAATTCCCAAACGCTCACCATCGCCAGAGCCGATTACATGGGTACCCTCTGCCCTAAGAAATTCATCAACACCACAATCGATTACAATCTCTTCGATATAATTCCTACTTACCGCAACATCACCTTGCTATATTGCTCCTCTTCTCCTCTCGCCGGGCAATTTAACTGTCCTGGATATGAGTTCGGCTTCATTGAGGGGAGCCCCATAAGTCCTAGTCTCTGCAATGTTAGCGTGATCGTGCCGGTTTCTTTGAATTTCTTCCCGCCGGTGAGTGATATTGTGAACGCTACTGAGATGTCGATGGCCATCGACGAGGGATTTGAGGTGAGTTTGAAGGATGACGGCGGTGGATGTGGAATTTGTAAGCAGTCGGAGGGGGTTTGCGGTTACGATTTGAGTTCGAATCGGACGACTTGCTATTGTCGCGCCGGCGATTCTATTGATAACGGAGCTTGTAGGAGGCTTCCGGCCGGTGGAGGTCCCGCATCTTCTCCGGGTGGGAATGGATCTAAGAATACATCCCTGATAATAGGCCTTTCTATTGGAGGGGTAACTGTACTAGGCCTATGCTTAGGATGCTTTGCCTTCTACATTACACAACGCAGAAAAAAACATGTTATGAAGTTGAAAAGCAAAGATCTTTCTTCACCTCCTTCAAGTGGAGGCATTCTGACTCCCTCCACCGTTCGCTCTAATAGTATTCCTTCCTATCCTTATTCGAGATCTAATCTCGAAAACGGGAGCTCCTACTTTGGAGCTCAAATCTTTACCTATGCCGAACTTGTGGAAGCAACTCATAATTTTGACCGTTCAAGGGAGCTTGGAGATGGTGGTTATGGTACTGTTTACTCTGGAACACTTAGGGATGGAAGGATAGTTGCAGTAAAGCGGCTATACGAGAACAATTATAAACGCGTGGAGCAGTTCACAAATGAAGTTGAGATTCTCTCAAAATTGCAACATCCGAACCTCGTGAAGCTTTACGGATGCACATCGAGACATAGCCGAGAACTCCTCCTTGTATATGAGTACATTCCTAATGGAACAGTGGCTGACCATCTTCATGGAAAACAAGCAAATTCAGGTCTCCTTAGTTGGTCTGTTAGGCTCAAGATTGCTATAGAGACAGCTAATGCGCTGGCTTACCTCCATCGCAATGATATCATTCATCGTGATGTCAAGACCAATAACATTCTTCTTGACAACAACTTCAAAGTAAAAGTGGCTGATTTCGGCCTGTCGCGGTTATTTCCCCTCGACGTTACTCATGTTTCAACTGCTCCGCAAGGGACACCAGGCTATGTTGATCCCGAATATTATCAATGCTACCAACTTACCGACAAGAGCGACGTGTATAGCTTTGGAGTTGTTTTGGTTGAGCTTATATCGTCGCTGCAGGCAGTTGACATCAACAGGAACAGAAATGATATCAATTTGTCAAATATGGCTATTGATAGAATTCAAAATCATGCATTGGCTGATTTAGTTGATCCAGATCTTGGGTTTGATAGGGATTATGCAGTAAGGTGTATGATAAAGTCAGTGGCAGAGTTGGCTTACCGATGTCTTCAACAGACAAGGGATGTGAGGCCTTCTATGGATGAAGTGCTGGAAATTCTAAAAGAATTAGAGAATGAAGAACTGACTGCTCGTAAAGCAGAAGTGCTAGATATAGGGTCTGATAATGTGAGACTTTTAAGGAATACATCATCTCTGCTTTCACCAGATTCTGCACCAGTGACAGATAAATGGGTGAAGGTCTTGAACAGAACAACTTAA 2040 44.66 MDSSISSFLLFFSFSLLFIFGNSFDFYSSCSSLFNCGHITNVGFPFWGDGRPAGCGNPALQLACEGNKTTIVIKEIKYQILKFSVENNSQTLTIARADYMGTLCPKKFINTTIDYNLFDIIPTYRNITLLYCSSSPLAGQFNCPGYEFGFIEGSPISPSLCNVSVIVPVSLNFFPPVSDIVNATEMSMAIDEGFEVSLKDDGGGCGICKQSEGVCGYDLSSNRTTCYCRAGDSIDNGACRRLPAGGGPASSPGGNGSKNTSLIIGLSIGGVTVLGLCLGCFAFYITQRRKKHVMKLKSKDLSSPPSSGGILTPSTVRSNSIPSYPYSRSNLENGSSYFGAQIFTYAELVEATHNFDRSRELGDGGYGTVYSGTLRDGRIVAVKRLYENNYKRVEQFTNEVEILSKLQHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGKQANSGLLSWSVRLKIAIETANALAYLHRNDIIHRDVKTNNILLDNNFKVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLVELISSLQAVDINRNRNDINLSNMAIDRIQNHALADLVDPDLGFDRDYAVRCMIKSVAELAYRCLQQTRDVRPSMDEVLEILKELENEELTARKAEVLDIGSDNVRLLRNTSSLLSPDSAPVTDKWVKVLNRTT 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29574370 29580299 - CcPI632755_07g015530.1 Cco07g1553 184206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1553 679 Coils Coil 620 640 - -
Cco07g1553 679 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 24 672 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cco07g1553 679 Gene3D Phosphorylase Kinase; domain 1 328 431 - -
Cco07g1553 679 CDD STKc_IRAK 361 630 - -
Cco07g1553 679 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 332 431 - -
Cco07g1553 679 ProSiteProfiles Protein kinase domain profile. 355 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1553 679 Gene3D Transferase(Phosphotransferase) domain 1 432 644 - -
Cco07g1553 679 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524(InterPro)
Cco07g1553 679 Pfam Protein kinase domain 356 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1553 679 Pfam Wall-associated receptor kinase galacturonan-binding 30 95 IPR025287 GO:0030247(InterPro)
Cco07g1553 679 SUPERFAMILY Protein kinase-like (PK-like) 336 631 IPR011009 -
Cco07g1553 679 FunFam Wall-associated receptor kinase-like 20 432 640 - -
Cco07g1553 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1553 679 SMART serkin_6 355 626 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1553 679 Pfam Wall-associated receptor kinase C-terminal 159 230 IPR032872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1395 Cco-Chr4:29317503 Cco07g1553 Cco-Chr7:29574370 9.90E-78 dispersed
Cco05g2518 Cco-Chr5:33498206 Cco07g1553 Cco-Chr7:29574370 1.10E-123 dispersed
Cco05g2743 Cco-Chr5:35294620 Cco07g1553 Cco-Chr7:29574370 8.30E-73 dispersed
Cco07g1553 Cco-Chr7:29574370 Cco08g1727 Cco-Chr8:28567219 1.90E-83 dispersed
Cco07g1553 Cco-Chr7:29574370 Cco11g0765 Cco-Chr11:8620899 3.90E-177 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86996 PF00069 Pkinase 3.50E-50 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1553 - - - 0.0