Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1570 ATGACAAAGCACCGGTTCAGAGATTCTATGAAGTCTCTATTTGGTAGTCACCTTGATCCAGAAACAGAAGAACGGCTCAAAGGGAGTAAATCAGATGTCGAGGACAAGGTGAATAGAATTAAAAAACTCATAAAAGATGAAGATCTAGGAATAAAAGACCACGACCAATCAGAAAATCGTGAAAAACAGTCCGTTGATGAATTAATTGATGACTTCCTTAAAGATTACCAGGCACTCTATGAACAATACGACAGTTTGGCCGGAGAGTTGAGAAGAAAATTTCAAAAAAGAAGGGAAAAGGAAAGCTCTTCCTCTAGCTCATCCGACTCGGATTCAGATGATTCAAATGATTCTTCAAAGAAAAAGGCCAGTAAAGATGATCGAGGTTTGGAGAGAGGACTCCAAGAAGTTGGTGAAATCAAGAAGGAACTGGAAGTAGCACTTTCAGAAGTAGCAGACTTGAAAAGGATATTGGCTACTACAATTAAAGAACATGAATCTCTAAATTCAGAACACCTGACAGCTTTAAGTAAGCTACAAGAAGCAGATGGAATTATTAGAGATTTGAAGGTTGAAGCTGAGACTTGGGATGCTCAGAAGTCTAAATTTCAGCTTGAAATTGAAGAACTGAATCTGACGTTGAGTAATGCAGGTAAGATTGAAGCTGAATTGAATGGGAGATTAAATGGTATGGTAACAGAGATTAATAGCTTCATGGAAGAAAAGGAAACTGCAAGGAGGAGGATTGAAGAGGGGGAAAGGACTATAGAAGAATTGAAGGCTTTGGCTGATCAGTTGAAGGAGAAGTTGTCAGCCACAATGGAAGAAAAGGAGACTCTAAACTTAAAACACTCCGAAGCTTTAGACAATATACAAGAAGTAGAAAAGGCCATAGGAGCCCTGAGGATTGAAGCAGAAGCATTGGGTCTTGAAAAATCTAAATTTCTTCTCGAGATTGAAGAGCTGAGTCAGAAGTTGAGTGCTGCTGCTGAAATTCAATCTGAATTGAATGGGAGACTGAATGATATTGAAATAGAGAAGGAAACCTTGACCAAGGAGAAAGAGACTGCGTGGAGGAAAATTGAGGCAGGGGATAAAATTGTAGAAGAATTAAATGCCACAATTGATTCGTTGAAGAGGCAGTTAAGAGCTACAATTGAAGAAAAGGAAGCTCTAAACCTAGAACATGGGACAGCTTTAAGCAAAATAAATGAAGCAGAAAAGATTATAGCAGACATGAGAATTGAAGCAGAAAGATTCGGTGTAGAAAAATCTGAATTTCTTCTTAAGATTGAAGAGCAGAACCAGAAGTTGAGTCTTGCTGAAAATTTAGAAGCAGATTTGAATAGGAAATTGAAAGACCTGGAAATGGAAAAAGATAAGTTGATAGAGGAAAAAGAGATTGCCTCAAGGATGATTAGAGAGGCAGAAAATGTCAAAGAAGAAATGGATGCAACGGTTGAGCAACTGAGGAGGCAATTGGCAACTGCAATTGAAGAAAAGGAAGCTCTGAACTTGCAGCACTTGGAAACTTTAAGTAGGGCACAAGAAGCAGATACTCTCACAAGAGATATGAAAGTTGAAGCAGAAACCTGGGGTACTGAAAAATCTAAATTGCTGCTTGAGATTGAAGAGCTGAATCAGAAGTTGGATACTGCTGGAAAATTAGAAGCGCAATTGAATGAGAGATTGAAAGATGCTGGAATGAAATATCATAACTTGATCAAGGAAAAGGAAGCTGCGCAGAGGACGATTGAAGAACAACAAAAAATTATAGAAGAACTAAATATCATGACTGATCAGGTGAAGAGGCAGTTGACAGCTATGATTGAAGAAAAGGAAGTTCTGAACTTGGATCATGCGACAGCTTTAAGCAAGATAACTGAAGCTGATAAGGTCATAGGAGATATGAAGACACAAGCTGAAACATGGGGTGTTGAAAAAACTGGTCTTCTGCACATGATTGAAGAGATGAGTCAGGAGATGAGCAATGCTGTTAAGATAGAAGCAGAACTCAATGGAAGATTGAAAGATATTGAAACTGAGAGAGATCGCTTGATCAAGGAAAATGAGATTGCATGGAAGGAGATTGAACTAGGTAAACAAGTTAGCCAAGAATTAAATGCCATGATTGATCAACTGAACAGCCAATTGACAACTACAGTAGAAGAAAAGAAAGCTCTCAACTTAGAACATGTGATGGCCTTAAGTAAGCTTCAAGAAGCAAATAAAATCATAGAAGATTTGAAAGTCGAAGCAGAAACCTGGAACCTGGAAAAATCTAAGCTGTTGCTTCAAGTTGAAGGGTTGAATCAGAGACTGAGCTATGCTTCTAAGTTAGAAACAGAACTCAATGAAAGATTGAACGTTGTGGAAATTGAGAAAGTCAACTTGATGAAAGAAAGGGAGACTGCTTGGAAGAGGATTGAAGAGGGAGAGAAAATTATCAAGGAATTAAGTGAGATTGGTGATCAGCTAAAAGAAGAAAAGACGACCATTACCCAAGAATTGGAAACAGTTCGAGGAGAAGTTTCTTTCTTGAAGCAGCAAATTCAGTCTACAGAACACCAGGCTGCAAACTTAACGCATTCTCTAGAAGCATCTGAGGGAGAAAATAGATTATTGAACTTGAAAATTATGGAGATCTCGGGTGAGATTCAATTGGCTCAACAGACGAATCAAGAACTTGTGTCTCAGTTGCAACTGTTGAAGGAGGATTTGGGCGTGAGGGAAAGAGAATGTTCTACTCTTGTTGAGAAGCACGAGGTGCATGTGAATGAATCGTTAACTCGCGTAAGTATGCTAGAAGCTCAAGTTACACAGTTGGAAACAGAATTGGAGTTATTACAAGCATGTGAAAAAGATTTGAGACAACAATTGGAGATAAAAACAGCTGAAGCAAAACAATTGGGAGAGGAAAATATTGGACTACAATCCCAAGTTTCAGAGATTGAAGTATCATTTAGGGAGAGGGAAAATGAACTTTCTATTCTCAGAAAGAAACTTGAAGACAGTGAGAATCGATCATCATCCAACACAGCAAATTTGACTCTGGAGGTCAACCGCCTACTAGAAGAGGTGAATTCTTTACATTCTCAAAAAGGTGAACTAGAAGAGCGGATGATATGCAGGAATGAAGAGGCTTCATTGCAAGTCAAGGGGTTGACAGATCAGGTGGATATGTTGCAGCAACAGTTGGAATTCCAACAGAGCCAAAAAATTGAATTGGAGTTGCAACTTGAGAGGACAACTCAAACAGTTTCAGAATATACAATACAGATACAAAAGTTTAAGGAGGAAATAGAACACAAGATTTCGGATCTACAGAGACTATTGAAAGAGAAAGAAGATTTAATAGTGCGAATCAAGGATCTTGAATCAGCATTTGACTCCTTATGCAATGAAAAGCACGAACTTGAGGAGAAACTTAAGAGTCAGATGGATGAGACTAGTCAATTCAGGGAGGAAAAGTTTGAGCTGGAGAAGAAGTTTTTTGAATTAGAAAGTACCTTGACAGATAAAGGAGTTGAGCTTTCTACTCTCCATGAGAAACACAGAAATGGAGAGGCTGAAGCCTCAAGCCAAAAACTAATCTTAGTGGCTCAGGTTGAAAATCTGCAAGAGAAATTGAATTCTTTGCAGAATGAAAAAAGTGAAATTGAGTTGCGGGTTGAAAGGGAGAAACAAGAACTCTTGGATACCTTAACTCAACTGGAAAAGGAGAAAGTTGAGTTATTGAGTTTAATTGGTGATTATCAAAGAAGTCTGAAGGAACATGAGGATGCATACAAGAAGCTAAATGATGAGTATAAACTGGTTGAAGATCAGTTTCAAGAATGTAAGCTAAAGCTTGATAATGCAGAAATGAAGATGGTAGAAATGGCCCAAGAATTTCATAAGGACATCAGATCAAAGGACCAAGTGAAAGATGACTTGGAGCTAATGGCTGAGGATCTAAAAAGAGACCTGGAAGTAAAAAGTGATGAGATAAATATCCTGGTTGAAAACGTTCGCACGATTGAAGTCAAGCTTCGCTTATCAAACCAGAAGCTTCGTGTTACAGAACAATTACTAACTGAAAAGGAAGAGATATTTCGGAAAGCTGAATTGAAATATCTAGAGCAACAGAAACTACTTGAAGAAAGAATTCATGGACTGTCTGCAACTATTGTTGCTAACAACGAAGCACACCAAAGGACGATATCTACCGTTTCAGAAAACATTAACAGTAACCTCTCCCAACTGGAATGTGTCATCAGGAAATTCATAGTGGACTATGCAAAGTATGAGAAGTGTGTCACTGAGACATCCCACGATCTACAGCTTGCAAAGAGTTGGGTCTCAAAAGCTATTCAAGAAACAGAAGGCCTAAAAAAAGAGGTGGCAAATCTTGGCAAACAACTTCAAGATAAGAAAGAGAGAGAATCAATATTAGTAAAACAGGTTGAGAAATTGGAGATTAAGGCCAATAAGGAAGGATCTGAGAAGGATGGATTGGTTCAAGCAATCCACCAACTTGAAAAGAGACAGAGAGAATTAGAGAAGATGATGGAAGAGAAGAATGAAGAGTGTAAGATAGTAAATTAA 4587 38.28 MTKHRFRDSMKSLFGSHLDPETEERLKGSKSDVEDKVNRIKKLIKDEDLGIKDHDQSENREKQSVDELIDDFLKDYQALYEQYDSLAGELRRKFQKRREKESSSSSSSDSDSDDSNDSSKKKASKDDRGLERGLQEVGEIKKELEVALSEVADLKRILATTIKEHESLNSEHLTALSKLQEADGIIRDLKVEAETWDAQKSKFQLEIEELNLTLSNAGKIEAELNGRLNGMVTEINSFMEEKETARRRIEEGERTIEELKALADQLKEKLSATMEEKETLNLKHSEALDNIQEVEKAIGALRIEAEALGLEKSKFLLEIEELSQKLSAAAEIQSELNGRLNDIEIEKETLTKEKETAWRKIEAGDKIVEELNATIDSLKRQLRATIEEKEALNLEHGTALSKINEAEKIIADMRIEAERFGVEKSEFLLKIEEQNQKLSLAENLEADLNRKLKDLEMEKDKLIEEKEIASRMIREAENVKEEMDATVEQLRRQLATAIEEKEALNLQHLETLSRAQEADTLTRDMKVEAETWGTEKSKLLLEIEELNQKLDTAGKLEAQLNERLKDAGMKYHNLIKEKEAAQRTIEEQQKIIEELNIMTDQVKRQLTAMIEEKEVLNLDHATALSKITEADKVIGDMKTQAETWGVEKTGLLHMIEEMSQEMSNAVKIEAELNGRLKDIETERDRLIKENEIAWKEIELGKQVSQELNAMIDQLNSQLTTTVEEKKALNLEHVMALSKLQEANKIIEDLKVEAETWNLEKSKLLLQVEGLNQRLSYASKLETELNERLNVVEIEKVNLMKERETAWKRIEEGEKIIKELSEIGDQLKEEKTTITQELETVRGEVSFLKQQIQSTEHQAANLTHSLEASEGENRLLNLKIMEISGEIQLAQQTNQELVSQLQLLKEDLGVRERECSTLVEKHEVHVNESLTRVSMLEAQVTQLETELELLQACEKDLRQQLEIKTAEAKQLGEENIGLQSQVSEIEVSFRERENELSILRKKLEDSENRSSSNTANLTLEVNRLLEEVNSLHSQKGELEERMICRNEEASLQVKGLTDQVDMLQQQLEFQQSQKIELELQLERTTQTVSEYTIQIQKFKEEIEHKISDLQRLLKEKEDLIVRIKDLESAFDSLCNEKHELEEKLKSQMDETSQFREEKFELEKKFFELESTLTDKGVELSTLHEKHRNGEAEASSQKLILVAQVENLQEKLNSLQNEKSEIELRVEREKQELLDTLTQLEKEKVELLSLIGDYQRSLKEHEDAYKKLNDEYKLVEDQFQECKLKLDNAEMKMVEMAQEFHKDIRSKDQVKDDLELMAEDLKRDLEVKSDEINILVENVRTIEVKLRLSNQKLRVTEQLLTEKEEIFRKAELKYLEQQKLLEERIHGLSATIVANNEAHQRTISTVSENINSNLSQLECVIRKFIVDYAKYEKCVTETSHDLQLAKSWVSKAIQETEGLKKEVANLGKQLQDKKERESILVKQVEKLEIKANKEGSEKDGLVQAIHQLEKRQRELEKMMEEKNEECKIVN 1528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29700469 29706258 + CcPI632755_07g015700.1 Cco07g1570 184223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1570 1528 Coils Coil 571 612 - -
Cco07g1570 1528 MobiDBLite consensus disorder prediction 96 130 - -
Cco07g1570 1528 Coils Coil 1302 1336 - -
Cco07g1570 1528 PANTHER COP1-INTERACTIVE PROTEIN 1 711 1523 - -
Cco07g1570 1528 Coils Coil 1196 1297 - -
Cco07g1570 1528 Coils Coil 886 906 - -
Cco07g1570 1528 MobiDBLite consensus disorder prediction 1 64 - -
Cco07g1570 1528 Coils Coil 73 93 - -
Cco07g1570 1528 Pfam KIP1-like protein 14 84 IPR011684 GO:0003779(InterPro)
Cco07g1570 1528 Coils Coil 809 871 - -
Cco07g1570 1528 Coils Coil 781 801 - -
Cco07g1570 1528 Coils Coil 235 311 - -
Cco07g1570 1528 Coils Coil 669 689 - -
Cco07g1570 1528 Coils Coil 1496 1523 - -
Cco07g1570 1528 Coils Coil 431 507 - -
Cco07g1570 1528 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 10 90 IPR011684 GO:0003779(InterPro)
Cco07g1570 1528 Coils Coil 1045 1156 - -
Cco07g1570 1528 Coils Coil 333 353 - -
Cco07g1570 1528 Coils Coil 739 766 - -
Cco07g1570 1528 Coils Coil 1454 1488 - -
Cco07g1570 1528 Coils Coil 529 563 - -
Cco07g1570 1528 Coils Coil 988 1008 - -
Cco07g1570 1528 Coils Coil 1020 1040 - -
Cco07g1570 1528 Coils Coil 925 973 - -
Cco07g1570 1528 Coils Coil 361 395 - -
Cco07g1570 1528 Coils Coil 704 731 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1570 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1569 Cco-Chr7:29690112 Cco07g1570 Cco-Chr7:29700469 5.70E-07 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g108 . . Bda06g00139 Bda08g00482 . Bpe07g00078 . . . Cmo16g00608 . . . . . Cpe14g00472 . . . . . . . . Cla07g01412 Cam07g1514 Cec07g1610 Cco07g1570 Clacu07g1502 Cmu07g1472 Cre07g1849 . . Cone6ag0838 . . . . Cme07g01580 . . . . . . Bma05g00855 Bma12g00049 . . . . Cma16g00559 . . . . . . . . . . . . . . . . . . . Csa04g00641 Chy07g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001955 2 3 1 4 1 2 2 2 2 2 1 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 2 5 3 1 66