Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1581 ATGGAGAATCATCTGGTGGAACTCTGCATCGATTCGGCCTGTCGGAGCAAGGACAGCGTCGAGAAATGGCGGAGGCAGAAGCGGAGCCTCGAGCGCTTGCCCTCTCATCTCGCCGATGCTCTCCTTCGCCGTCTACATGCTCGTCGTCTCCTCTATCCTTCTCTTCTCGAAGTTTTCAAATATACCATAGAGGTGGTCGATCTAAGTGGTGAAAATGCGGTTGATTCAGAATGGATGGCCTACTTAGGGTCATTTCGTTACTTGCGATCATTAAACGTTTCCAATTGCCGCAGGCTTTCTAGTTCTGGTATATGGACTATTTCAGGGATGACTACTTTAAGGGAGTTGAACGTTTCTAGATGTTTGAAAGTTACTGATGCTGGAATTAGGCATCTTTTGTCCATACCAACCTTGGAAAAGCTATGCATTGCCGAGACTGGCATCACTGCACACGGAGTAACACTCCTTTCTTCGTTAAAAACATTGGTGTTCTTGGACTTGGGTGGTCTACCTGTCACCGATCAGGCCCTGAGCTCTCTTCAGGTGCTTACGAAATTACAATACCTTGACCTTTGGGGTAGTAAAATATCTAACAGTGGATCTGCTGTTCTTCAAATGTTTCCAAAGTTGAGCTTCCTGAATATAGCTTGGACTAATGTCACAAAGTTCCCGAACTTGCCTCACCTAGAGTGTCTGAACATGAGTAATTGCATTATTGACTCTACACTTAAAGGGCCTGGTGATAAAGTTCCTCTAAGAAAGCTTATTGCCTCTGGAGCAACATTTTCGAATGAGACCGAAGATCTGGCATTTGTTGGAATACATGTCCTATATTATCTGGACTTTTCAAACGCTTCTTTTCACAGATTCTGCTTCTTATCTCATATGCAAGCAGTAGAACATTTAGACCTTAGCTCTACTACCATAGGAGACGATTCAGTTGGATTAATTGCGTCTGTTGGAGAAAATTTGAAATATCTAAATCTAAGCTCCACAGCAGTCAGCTCTTCTGGAGTTGGAATTTTAGCTAGAAAAGTAACCAATCTGGAAACTTTATCATTATCTCATACTATGATTGATGATGCTGTCCTATCATATATAAGTATGATGCCTTCCTTGAAGTCTATTGACCTCAGTGAAACAGACATCAAAGGTTATATACACCTATCAGCTACAGAGAAAATCAAATTTCTTTCATTGACAGAATTGCAAAACCTTGATTGTTTAGAAATGTTGAATCTGGAGCATACTCACGTTGATGATGAATCTCTACGCCCATTATCAAGATTTCGAAAACTGAGTCACTTGATGCTTAGAGGTCCCTCATTTACAGACGTGGCATTGAGCTACTTGTCAATCTTGCCCAAGCTGAAAACTCTCAGCATTCGTGATGCAGTTTTGACCAACCAGGCATTTGATGCACTTAGGCCTGTGGCAACTTTACAAACGATTGACTTGAGAGGTTGTTGGCTCATAACTGAGGGTGGTCTTTCGGGATTTCACAGAAGGTTTCCACAAATTGAAGTTAGACATGAACATTTCCACTTCTCATCTGATCCAACTTCCTCTGATCGACCTTCAACTCATTCTACTCCAAAGAAATTACAACTGAACCAGAGGAGCAGATCTACGAGCATGTCACCATACTTTGTAGATCAAAGGTTGAAGTATAGCAAAGAAGAGCTACTTGCCCTACAATTTTCTTCTCTGTCCCATGGTTCCACATCTGCTCCTGAAATCGGTCAGAAATCTGATAGCTGA 1761 42.08 MENHLVELCIDSACRSKDSVEKWRRQKRSLERLPSHLADALLRRLHARRLLYPSLLEVFKYTIEVVDLSGENAVDSEWMAYLGSFRYLRSLNVSNCRRLSSSGIWTISGMTTLRELNVSRCLKVTDAGIRHLLSIPTLEKLCIAETGITAHGVTLLSSLKTLVFLDLGGLPVTDQALSSLQVLTKLQYLDLWGSKISNSGSAVLQMFPKLSFLNIAWTNVTKFPNLPHLECLNMSNCIIDSTLKGPGDKVPLRKLIASGATFSNETEDLAFVGIHVLYYLDFSNASFHRFCFLSHMQAVEHLDLSSTTIGDDSVGLIASVGENLKYLNLSSTAVSSSGVGILARKVTNLETLSLSHTMIDDAVLSYISMMPSLKSIDLSETDIKGYIHLSATEKIKFLSLTELQNLDCLEMLNLEHTHVDDESLRPLSRFRKLSHLMLRGPSFTDVALSYLSILPKLKTLSIRDAVLTNQAFDALRPVATLQTIDLRGCWLITEGGLSGFHRRFPQIEVRHEHFHFSSDPTSSDRPSTHSTPKKLQLNQRSRSTSMSPYFVDQRLKYSKEELLALQFSSLSHGSTSAPEIGQKSDS 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29829316 29833352 + CcPI632755_07g015810.1 Cco07g1581 184234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1581 586 MobiDBLite consensus disorder prediction 520 546 - -
Cco07g1581 586 PANTHER - 5 548 IPR051341 -
Cco07g1581 586 SMART LRR_CC_2 110 135 IPR006553 -
Cco07g1581 586 SMART LRR_CC_2 321 345 IPR006553 -
Cco07g1581 586 SMART LRR_CC_2 85 109 IPR006553 -
Cco07g1581 586 SMART LRR_CC_2 430 454 IPR006553 -
Cco07g1581 586 SMART LRR_CC_2 159 183 IPR006553 -
Cco07g1581 586 Gene3D Ribonuclease Inhibitor 389 513 IPR032675 -
Cco07g1581 586 Gene3D Ribonuclease Inhibitor 8 146 IPR032675 -
Cco07g1581 586 SUPERFAMILY RNI-like 62 384 - -
Cco07g1581 586 MobiDBLite consensus disorder prediction 515 546 - -
Cco07g1581 586 Gene3D Ribonuclease Inhibitor 147 245 IPR032675 -
Cco07g1581 586 Gene3D Ribonuclease Inhibitor 258 388 IPR032675 -
Cco07g1581 586 Pfam Leucine Rich repeat 299 317 IPR001611 GO:0005515(InterPro)
Cco07g1581 586 SUPERFAMILY RNI-like 347 498 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1581 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g130 . . . . . . . Bma14g00633 . . . . . . . . . . . . . . . . Cla07g01424 Cam07g1525 Cec07g1621 Cco07g1581 Clacu07g1513 Cmu07g1483 Cre07g1860 . . . Cone9ag0850 . . . . . . Bda07g00458 . . Bpe11g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00655 Chy07g01156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005843 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 7 1 39