Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1584 ATGGCCGTCTCCAAATTCTCCGTCGCCGTCCTCATCCTCTTAGCCTTTTTATTCCTTAACGGAGCCGAATCTCAGTTTCTTTGCAAAAGCTTCTCCTGCAATGGAGTTTCCTCGCCGGACGTTCGATTTCCGTTCCGACTGAAGAATTCGCAGGATTCTCGGTGTGGATACCAGCCAGATTTCGACCTGTTCTGCAACAATCGAAACCAGACGATTCTGAATCTCCCGAACGCCGGAGACCTCGTAGTGGAGATTATCGATTACAGATTTCAGAGGTTGTGGATCAACGATCCGGATCAATGCTTTCCGAGACGAATACTAATAGACTCTTTCAATTTGGAGAACTCGCCGTTCATTTATAATTATCGATTCGATGAATTCACCGTTCTTAACTGCTCCTATTACGTCCAAACGCTACCGTTCGATCGCGTCCGGAAGATCAAATGCATGAGCGGCGGAAACCACACTGTAATCAATGTGCCAAACAGAGACCTAAAGGCGGTTACAGATTTCCTACCGTCGCCGTGTAAAGTGATTGCGACGAAGAAGCTTCCGTTAACAGGAATGGAGCTTGAAGAAGGAATGGTGGTGAGGTGGAGTGAGCCGGCTTGCGGAAACTGCGAGACGCGCGGTGGAGATTGTGGATTCAAAAGCAATTCGAGTGGTGAAGTCGTGTGTTTCAATCTTCCAAAAAGCGGAATTCCACGAGGTGCAAAATATGGGTTGATCATCGGTGTGGGAATCCCAGGAGTCCTCTTCATAATTGGGTTGGTCTGTTACATTTGTGGCAGGTTCAAGGCCTTTGCCCGACCCAATCGTCCAACATCACACCTTTCTCTTTCGTTGGGCCACCAACCCACTTTTACCAAAGCAGGCCTCGATGGTTCGACAATTGAATCATTCCCCAAGACAACACTGGGCCAGAGCAGACGACTTCCAAAGTCCAATGACACCACATGCGCCATATGCTTATCAGAGTACCAGTCAAAGGAGACAATTAGAACCATACCAGATTGTGGTCACTTTTTCCATGCCAAATGCATTGATGAGTGGCTTAAATTGAACGCCACGTGTCCAGTCTGTCGGACCTCGCCCGAGGATTCCTCTTGCACCTCCACGCCTTCTCAATCCATGTCAGTGCCAACGTCGCCGCAATCAGTAGCATCATTGCCACATCATCACTAG 1185 48.52 MAVSKFSVAVLILLAFLFLNGAESQFLCKSFSCNGVSSPDVRFPFRLKNSQDSRCGYQPDFDLFCNNRNQTILNLPNAGDLVVEIIDYRFQRLWINDPDQCFPRRILIDSFNLENSPFIYNYRFDEFTVLNCSYYVQTLPFDRVRKIKCMSGGNHTVINVPNRDLKAVTDFLPSPCKVIATKKLPLTGMELEEGMVVRWSEPACGNCETRGGDCGFKSNSSGEVVCFNLPKSGIPRGAKYGLIIGVGIPGVLFIIGLVCYICGRFKAFARPNRPTSHLSLSLGHQPTFTKAGLDGSTIESFPKTTLGQSRRLPKSNDTTCAICLSEYQSKETIRTIPDCGHFFHAKCIDEWLKLNATCPVCRTSPEDSSCTSTPSQSMSVPTSPQSVASLPHHH 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29864992 29868764 - CcPI632755_07g015840.1 Cco07g1584 184237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1584 394 Pfam Wall-associated receptor kinase C-terminal 188 227 IPR032872 -
Cco07g1584 394 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Cco07g1584 394 MobiDBLite consensus disorder prediction 369 394 - -
Cco07g1584 394 CDD RING-H2_EL5-like 320 362 - -
Cco07g1584 394 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247(InterPro)
Cco07g1584 394 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 366 IPR046948 -
Cco07g1584 394 SUPERFAMILY RING/U-box 314 365 - -
Cco07g1584 394 SMART ring_2 320 361 IPR001841 -
Cco07g1584 394 Pfam Ring finger domain 319 362 IPR001841 -
Cco07g1584 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 367 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1584 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1584 Cco-Chr7:29864992 Cco08g1224 Cco-Chr8:23960290 5.80E-24 dispersed
Cco01g0687 Cco-Chr1:7146901 Cco07g1584 Cco-Chr7:29864992 6.20E-09 transposed
Cco05g0218 Cco-Chr5:1693574 Cco07g1584 Cco-Chr7:29864992 3.50E-11 transposed
Cco09g2351 Cco-Chr9:37671971 Cco07g1584 Cco-Chr7:29864992 2.10E-10 transposed
Cco10g1640 Cco-Chr10:29802448 Cco07g1584 Cco-Chr7:29864992 2.40E-09 transposed
Cco05g1050 Cco-Chr5:9281886 Cco07g1584 Cco-Chr7:29864992 8.10E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g132 . Blo03g00248 Bda06g00146 Bda08g00465 . Bpe07g00072 . . . Cmo16g00597 . . . . . Cpe14g00462 . . . . . . . . Cla07g01426 Cam07g1528 Cec07g1624 Cco07g1584 Clacu07g1515 Cmu07g1486 Cre07g1863 . Cone12ag0251 Cone6ag0851 Cone9ag0852 . . . . . Blo19g00367 . . Bpe08g01520 . . Bma12g00607 . . . . Cma16g00545 . . . . . . . . . . . . . . . . . . . Csa04g00657 Chy07g01154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35