Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1603 ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTAAATTCCCGGCAGAAGTGATGGACGTAGAAACGATGATGGAACAGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTTTTACATCCAAGCGACCCAAGACTGATTTCTCTATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCACCCACTGTTTTGTTGCAGGAGCTGGAGGCATGCAGCCACAGCCTGAGGAGCAGAGGCCTATGTCTTGTTCCAATCTCGTGTACTGCTGGAGTTGCGCGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCCCCCAAATTTGAGAAGCCTATCTCACCGTTCAATTGA 507 47.73 MIASSLCNASAKFPAEVMDVETMMEQKRSLCSVDESALTSFTSKRPKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPPTVLLQELEACSHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKPISPFN 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30066858 30070913 + CcPI632755_07g016030.1 Cco07g1603 184256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1603 168 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 109 IPR036638 GO:0046983(InterPro)
Cco07g1603 168 FunFam Transcription factor bHLH113 family 44 120 - -
Cco07g1603 168 Gene3D - 42 109 IPR036638 GO:0046983(InterPro)
Cco07g1603 168 SMART finulus 53 100 IPR011598 GO:0046983(InterPro)
Cco07g1603 168 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 139 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco07g1603 168 CDD bHLH_AtbHLH_like 51 102 IPR045239 -
Cco07g1603 168 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1603 Cco-Chr7:30066858 Cco11g0092 Cco-Chr11:1040851 1.80E-22 dispersed
Cco07g1603 Cco-Chr7:30066858 Cco10g0563 Cco-Chr10:6983232 1.70E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1603 - - - 0.0