Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1625 ATGGTGTTTTCTCGAGCTTCCCAGCTCGTCGAAATGCAACGAGGAGACTGTTTTACACAGCCACCACCCGTCTCCGGTGGGTTTCCGCTGTTTCACGACGTTCCGACAGATGACATGTCGTTCGATGCGACGAGTAGTATGAAGGACGACGACATCGGCGTTCCGCTTGGTAAAAGATTTCATGTTGATGAGTCTGCTAGGAATGGAGTAGATGGGTTGGAGAAGAAGGAGGCTGCGATGGCGGGAACGACGACAACAGGACGGAGAGATTATGATAAGAGAAAGAAGATGAGAAGCCGGAGATTTGCTTTTCAAACGAGAAGTCAAGTTGATATTCTTGACGATGGTTATAGATGGAGAAAATATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGTTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTTCAAAGGCTAACTAGAGATGAAGGGGTGGTTGTGACAACTTATGAAGGCATTCATTCTCATCCTATTGAGAAATCCACTGAGAACTTTGAGCATATTTTGAGTCAGATGCAAATTTACACTTCTTATTGA 579 44.39 MVFSRASQLVEMQRGDCFTQPPPVSGGFPLFHDVPTDDMSFDATSSMKDDDIGVPLGKRFHVDESARNGVDGLEKKEAAMAGTTTTGRRDYDKRKKMRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPIEKSTENFEHILSQMQIYTSY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30315596 30319844 + CcPI632755_07g016250.1 Cco07g1625 184278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1625 192 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 80 175 IPR044810 GO:0003700(InterPro)
Cco07g1625 192 SMART WRKY_cls 113 172 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g1625 192 FunFam WRKY transcription factor 57 99 173 - -
Cco07g1625 192 Gene3D WRKY domain 98 172 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g1625 192 SUPERFAMILY WRKY DNA-binding domain 105 172 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g1625 192 ProSiteProfiles WRKY domain profile. 108 173 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco07g1625 192 Pfam WRKY DNA -binding domain 114 171 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1560 Cco-Chr5:19839707 Cco07g1625 Cco-Chr7:30315596 1.40E-46 dispersed
Cco07g0837 Cco-Chr7:19298010 Cco07g1625 Cco-Chr7:30315596 1.90E-30 dispersed
Cco07g1625 Cco-Chr7:30315596 Cco11g0738 Cco-Chr11:8139357 3.00E-42 dispersed
Cco07g1625 Cco-Chr7:30315596 Cco05g0159 Cco-Chr5:1236545 1.90E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59701 PF03106 WRKY 9.30E-26 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1625 - - - 0.0