Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1631 ATGTCCACCGTCGTCGGTTCTCTGTCCACTAAGGATGTTAATTTCAATCCTCAAGTGGGAGAGGAAGAGGTGGTTAGGACAATGAACCACCCACAAGAAGAAGATCAGATCATCATCATCCAGGAAGATGATCAAGACAACACACTTAAGCTAAGGAGAGGGATGGATCTTGGTCCTCAATTCTCTCTCAAGGAACAACTCGACAAAGATAAGGATGATGAAAGCTTGAGGAAATGGAAAGAACAGTTGCTGGGTAGTGTGGATCTCTCAGCCATTGGAGAAAGCAAAGAAGCAGAAGTGAAAATCCTGAGCCTAACAATCCAATGTCCAGGGAGGGAAGATCTTGTGCTGCCATTGCCATTTACCAAAACTTCCAAGAGTAGCAGCCTCTTCTCCTTAAAGGAAGGCTCCCCGTACCGTCTCCGGTTCAATTTCTTCGTTGCCGGGAATATCGTCTCCGGTCTCAAGTACACAAATACTGTCTGGAAGACTGGTGTTAAAGTGGATCATACAAAGAAAATGCTTGGAACTTTCAGTCCTCAGAAGGAGCCTTATGTGTATGAAATGGAAGAAGAAACTACACCCTCCGGAATGTTTGCAAGAGGGTCCTATTCTGCAAGGACAAAGTTTGTGGATGATGATGGGAAGTGCTATTTGGATGTTAGTTACCACTTTGAAATCCAAAAGAATTGGGCAACACCCTCTTGA 708 44.49 MSTVVGSLSTKDVNFNPQVGEEEVVRTMNHPQEEDQIIIIQEDDQDNTLKLRRGMDLGPQFSLKEQLDKDKDDESLRKWKEQLLGSVDLSAIGESKEAEVKILSLTIQCPGREDLVLPLPFTKTSKSSSLFSLKEGSPYRLRFNFFVAGNIVSGLKYTNTVWKTGVKVDHTKKMLGTFSPQKEPYVYEMEEETTPSGMFARGSYSARTKFVDDDGKCYLDVSYHFEIQKNWATPS 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30377188 30379556 - CcPI632755_07g016310.1 Cco07g1631 184284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1631 235 Gene3D Coagulation Factor XIII, subunit A, domain 1 53 233 IPR024792 -
Cco07g1631 235 Pfam RHO protein GDP dissociation inhibitor 42 230 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cco07g1631 235 PRINTS RHO protein GDP dissociation inhibitor signature 151 167 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cco07g1631 235 PRINTS RHO protein GDP dissociation inhibitor signature 168 183 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cco07g1631 235 PRINTS RHO protein GDP dissociation inhibitor signature 210 227 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Cco07g1631 235 FunFam Rho GDP-dissociation inhibitor 1 53 233 - -
Cco07g1631 235 PANTHER RHO GDP-DISSOCIATION INHIBITOR 35 231 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER)
Cco07g1631 235 SUPERFAMILY E set domains 41 231 IPR014756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1631 K12462 - - csv:101219208 348.206
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1932 Cco-Chr4:33698837 Cco07g1631 Cco-Chr7:30377188 4.40E-68 dispersed
Cco07g0123 Cco-Chr7:1319843 Cco07g1631 Cco-Chr7:30377188 2.10E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe13g00750 . . . . . . . . . . . . . . . . . . Cla07g01471 Cam07g1571 Cec07g1670 Cco07g1631 Clacu07g1562 Cmu07g1530 Cre07g1906 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012234 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29