Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1632 ATGAGAAGACGGCAAAAGGGATTTCGAAACAACATTCCAAGTGGATCTCTCAAGGAGCAAGCACACTTAAAAGAACACCCCGTCATATCAACCGGCATTTCCCTGTACCCGGTCATTAATTCTCCCTCCCGTGATCGCAGTGAAAAAGAGAAAAGTGAGCGCGAGCGGCTGGCGATGGCGGAGGTTGTAGAAAGGGAGGAGGTGACTCTCCAGAAATTGAAGACGATGATGGCGGACTTTGCGAAAGAGAGAGACTGGGATCAGTTTCACAGCCCTAGAAATCTCCTCCTCGCTATGGTGGGTGAAGTGGGTGAGTTATCCGAGATATTCCAGTGGAAAGGGGAAGTTCCAAGAGGCCTTCCTGACTGGAAAGATGAAGAGAAACAACATCTTGGGGAAGAACTCTCAGATGTTTTGCTGTACCTTGTTAGGCTTGCTGATATTTGTGGGATTGATCTTGGCAAAGCAGTTCTAAGGAAGCTGGAGCTGAATGCCAAGAAATATCCAGTCAAGCTTTGCAAAGGGTCTTCACGAAAACACACAGAAATCAGCTGTTGTGAAGACGATTTCAATGAAAACGGTGGAAAGGAAGACCCCACCAAATAG 606 47.19 MRRRQKGFRNNIPSGSLKEQAHLKEHPVISTGISLYPVINSPSRDRSEKEKSERERLAMAEVVEREEVTLQKLKTMMADFAKERDWDQFHSPRNLLLAMVGEVGELSEIFQWKGEVPRGLPDWKDEEKQHLGEELSDVLLYLVRLADICGIDLGKAVLRKLELNAKKYPVKLCKGSSRKHTEISCCEDDFNENGGKEDPTK 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30384286 30387861 + CcPI632755_07g016320.1 Cco07g1632 184285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1632 201 PANTHER - 63 183 - -
Cco07g1632 201 Pfam MazG-like family 102 182 IPR025984 GO:0009143(InterPro)|GO:0047429(InterPro)
Cco07g1632 201 MobiDBLite consensus disorder prediction 1 22 - -
Cco07g1632 201 Gene3D - 58 174 - -
Cco07g1632 201 Coils Coil 63 83 - -
Cco07g1632 201 SUPERFAMILY all-alpha NTP pyrophosphatases 69 182 - -
Cco07g1632 201 CDD NTP-PPase_RS21-C6_like 74 164 IPR025984 GO:0009143(InterPro)|GO:0047429(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1632 K16904 - - csv:101213795 249.595
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1790 Cco-Chr6:28299108 Cco07g1632 Cco-Chr7:30384286 1.00E-38 dispersed
Cco07g1632 Cco-Chr7:30384286 Cco09g0799 Cco-Chr9:7430078 1.40E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1065 Blo01g00274 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g01074 . . . . . . . . . . . . . . . . . . . Cla07g01472 Cam07g1572 Cec07g1671 Cco07g1632 Clacu07g1563 Cmu07g1531 Cre07g1907 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002028 4 1 2 4 4 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 1 2 2 1 2 3 2 1 65