Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1648 ATGTCTTCGCAATATCCACTCCCAAAATGGGCTTCCAAGCCTTGCGTAATGGGCATCGATGAAGCTGGTCGAGGCCCCGTTTTAGGGCCAATGGTGTATGGATGCTTGTACTGCGCTACTTCCTATTTAATAGAACTTTCGTCTTTGAATTTTGCAGACTCAAAAACTTTGAAAGAAGAGAAGAGGGAGGAATTGTTTGAAGATTTGAAGGCTAACGAGTCAATTGGATGGGCTGTTGATGTCATAGATCCTCGAGAACTTTCATCCAAAATGCTAAATAAAGTAAAGATAAACCTAAATGAAATATCACATGACTCTGCAATGGGTCTGGTCACCAAGGTTCTAGGCATGGGAGTTCTTTTAACTGAGGTCTATGTGGATACTGTTGGAGATCCTGAAAAGTACAGAATTAAGTTGTCTGAGAAATTTCCCAATGTAAAATTTGTAGTTGCAAAGAAAGCTGATAGTTTATATCCTGTTGTCAGTGGGGCAAGCATAGTCGCAAAGGTCACAAGAGATCGTGCATTGCGGGAATGGGCATTGGAGGAAACGGCTGAAAACATGCATAGAAACTTTGGTTCTGGATACCCTGGAGATCCAACAACTAAATGTTGGTTAGAAGATCACAAGCACTCGGTATTTGGGTTCCCCACATTAGTCCGCTTCAGTTGGGGTACCTGCACTTCATATTTCAAAGACGTCGTTGAAGTATTATGGGAGTCGGACAAAGTGGATGAAGATGGGGGAACGGCTGGAAGTGGTAAGAAACAATTAAGACTAAGCAATGTTGGTATCACCACATCCAAGAGAAAGAGTGAAGAAATTGAATCAAATGCCAAAGGACGGTGCAAGTTTTTCCAGGCTAGAAAACTTGAACAACTCACTCATTTTTGA 894 41.83 MSSQYPLPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCATSYLIELSSLNFADSKTLKEEKREELFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLGMGVLLTEVYVDTVGDPEKYRIKLSEKFPNVKFVVAKKADSLYPVVSGASIVAKVTRDRALREWALEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVLWESDKVDEDGGTAGSGKKQLRLSNVGITTSKRKSEEIESNAKGRCKFFQARKLEQLTHF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30543890 30547015 + CcPI632755_07g016480.1 Cco07g1648 184301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1648 297 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523(InterPro)
Cco07g1648 297 FunFam Ribonuclease 1 186 - -
Cco07g1648 297 SUPERFAMILY Ribonuclease H-like 15 232 IPR012337 -
Cco07g1648 297 Gene3D - 1 186 IPR036397 GO:0003676(InterPro)
Cco07g1648 297 FunFam Ribonuclease 188 234 - -
Cco07g1648 297 CDD RNase_HII_eukaryota_like 17 233 - -
Cco07g1648 297 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 277 IPR001352 GO:0003723(InterPro)|GO:0004523(PANTHER)|GO:0004523(InterPro)|GO:0006298(PANTHER)|GO:0032299(PANTHER)|GO:0043137(PANTHER)
Cco07g1648 297 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523(InterPro)
Cco07g1648 297 Gene3D Ribonuclease hii. Domain 2 187 234 IPR023160 GO:0004523(InterPro)
Cco07g1648 297 NCBIfam ribonuclease HII 16 228 IPR004649 GO:0004523(InterPro)|GO:0016070(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2448 Cco-Chr5:32936166 Cco07g1648 Cco-Chr7:30543890 1.00E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1648 K10743 - csv:101210143 573.163