Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco07g1656 | ATGAAGAAGAGGATGGAGTGGATGAGAAATGAAAAGGAAATTCTCTTCATCTGCAAGGAATTATCGATCGGAGGATCGAATTTCGATCCCCCAAAGCTCCCTGCAGCCTGTGTTTTTTCTTCTGAGGACCTTGTTAGGTATGATTGTGGCCTTCTTTTCGTCGTTGATGAATGTGTTTGTGGTGCTGCAGCGATGGCTAGATCTTTTTTGCAGGTTGCTGCTACGGAAGAGGTTGCTTCTCCTCTCCGAGTTGTTCAGATTGAAGGATTGGTTATATTGAAGATAATCAAGCATTGCAAGGAGTTTTCACCAGCTCTTGTTACTGGGCAACTTCTTGGGTTAGATGTTGGTAGCGTTCTTGAAGTCACTAATTGCTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAAGCCGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCTTGAGAGAAGTCAATGTTGACAACAACACTGTTGGATGGTACCAGTCGACCTTCTTAGGTTCATATCAGACTGTCGAGCTGATTGAGACCTTTATGAATTATCAGGAAAATATCAGGCGGTGTGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGTGTCTTAGCTCTCAAAGCATTGAAGCTTTCAGATTCTTTTATGGAGCTTTACCGCACTAACAGCTTTACAGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGACATTTTTGAGGAAATACCTATCAAAGTTTCGAATTCAGCCCTCATTAGTGCTTTTATGACGGAGCTTGAAGCTGACTCTCCGGTTACCCAGTGTGATTATGACCGCCTGCAACTTTCAACAAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCAGTGGAGCAGCAGAAGTTTCAATTTTATTATCGGAGCCTGACCCGTCAGCAAGCTCAACAACAAGCATGGCTTCAGAAAAGAAGGGCTGAGAACATGATGAGGAAGGCAGCAGGAGAAGAGCCTCTCCCTGAGGAGGATCCTACAAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACGAATCAAATAGCAAACTATTGCAATCAAATTAATGGGGTTGCTGGACAGAGTTTCAATAGACTTCATTTGATGAAGGCCCTTCACGACAATTAA | 1194 | 43.13 | MKKRMEWMRNEKEILFICKELSIGGSNFDPPKLPAACVFSSEDLVRYDCGLLFVVDECVCGAAAMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRAENMMRKAAGEEPLPEEDPTNPIFKPLPEPSRLDSYLITNQIANYCNQINGVAGQSFNRLHLMKALHDN | 397 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 30617144 | 30621866 | + | CcPI632755_07g016560.1 | Cco07g1656 | 184309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco07g1656 | 397 | Gene3D | Cytidine Deaminase, domain 2 | 55 | 274 | - | - | |
| Cco07g1656 | 397 | Hamap | Eukaryotic translation initiation factor 3 subunit H [EIF3H]. | 80 | 397 | IPR027524 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
| Cco07g1656 | 397 | Pfam | C-terminal region of eIF3h | 203 | 395 | IPR045810 | - | |
| Cco07g1656 | 397 | ProSiteProfiles | MPN domain profile. | 85 | 218 | IPR037518 | - | |
| Cco07g1656 | 397 | SMART | pad1_6 | 84 | 217 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
| Cco07g1656 | 397 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 82 | 187 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
| Cco07g1656 | 397 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED | 68 | 388 | IPR050242 | GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005852(PANTHER)|GO:0008237(PANTHER)|GO:0016282(PANTHER)|GO:0042788(PANTHER) | |
| Cco07g1656 | 397 | CDD | MPN_eIF3h | 83 | 346 | IPR027524 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
| Cco07g1656 | 397 | FunFam | Eukaryotic translation initiation factor 3 subunit H | 64 | 273 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco07g1656 | K03247 | - | csv:101211860 | 660.603 |