Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1657 ATGGCTTTCCTCTGTTTCTTGGCCCTTTCCCTTTTGGGATCCATGGCCATTCTTTTTCAGAATTGCATTGCCTTCAATGTGGTTTCCCCTCAACTCAACGACGATATTCTCGGCTTGATTGTCTTCAAGTCCGATCTCCATGATCCTTCTTCCATTCTCTCCTCCTGGAATGAAGACGATGATTCCCCTTGTTCCTGGGAGTTCGTTAAATGCAACCCCATTAATGGCAGAGTGTCCGAAGTTTCCATTGATGGGTTGGGGCTATCAGGGAGAATCGGAAGAGGGCTTGAGAAATTGCAGCATCTCAAGGTATTGTCTCTCTCTGGAAATAATTTCACTGGCAATCTTAGTCCTCAGCTTAGTCTTCCTCCCAGTCTCGACAGAGTTAATTTCAGTCGTAATAGTTTATCTGGGCGGATTCCCACTTCTCTAATCTCTATGTCCTCCATTAGATTTCTTGATTTTTCTGATAATCTCTTGTCTGGGCCTCTTCCTGATGAAATGTTTCTTAACTGTTCTTCGCTTCATTTTCTCTCTCTTGCGTCTAATATGCTTCAAGGCCCTGTCCCCAACACATTGCCCACAAGGTGTTTGTATTTAAACACTCTCAATCTTTCAGCCAATCAATTCTCTGGTAGCTTGAATTTTGCGCCGGGGGTTTGGTCTTTGACAAGGCTCAGGACATTGGATCTTTCAAACAATGCTTTCTCTGGATATTTACCACAAGGGGTTTCGGCCGTCCATAATCTAAAAGAGCTCAAGTTGCAGAACAACCAATTCACAGGTCCATTGCCTGCAGACTTAGGATTATGCATCCACTTGGCTACATTGGATGTCAGCCGGAACCGTCTCACGGGACCGCTACCCGAGTCAATGAGACTCTTAACCTCCTTGACCTTTTTCAACATAGGATTCAACACGTTTTCAGGTGAGCTACCACAGTGGATTGGGAACATGACAAGCTTGGAATACTTGGAATTTTCAAGCAATGGCTTCACTGGCAGTCTTCCCTTGGCAATGGGGGGATTAAGATCTGTGAAATACATGAGTTTTTCAAACAACAAGCTGTCTGGGAACATCCCAGAGACATTGATGGAATGTTCTGAGCTATCTGTGATCAAGCTTGAAGGAAATAGCTTGAATGGAAGGGTGCCAGAAGGGTTGTTCGAACTGGGTTTGGAGGAGATGGTTTTGTCTCAGAATGAGCTGATTGGTTCGATCCCAGTAGGATCAAGCAGGCTGTATGAGAAGCTAACAAGAATGGACTTGTCAAGGAACAGATTAGAAGGAAACTTTCCAGCAGAAATGGGACTGTACAGAAATTTGAGGTACTTGAATCTTTCATGGAACAACTTTAAGACAAAGATTCCACCAGAAATGGGGTTGTTTCAGAATTTGAATGTGTTGGACATTAGAAGCAGTGATCTGTATGGTTCAATTCCTGGAGAATTGTGTGATTCTGGGAGTTTGGGGATTCTTCAGCTTGATGGAAACTCTTTGATTGGTCCAATTCCTGACGAGATTGGGAATTGTCTCTCACTTTACTTGCTGAGTTTATCCCACAACAATCTAAGTGGAGCAATCCCAAAGTCAATCTCCAAGCTAAGCAAGCTAGAGATTCTAAGACTTGAATCAAATCAACTGAGTGGAGAAATACCTCAAGAGCTTGGAATTCTTCAAAACCTGCTTGCTGTTAACATTTCGTACAATATGCTAACAGGCAGGCTTCCTGTTGGTGGCATTTTTCCAAGCTTGGATCAAAGTGCTTTGCAAGGGAACTTAGGCCTTTGCTCCCCTTTGCTCAAAGGACCTTGCAAAATGAATGTCCCTAAGCCCCTCGTTCTTGACCCCAATGCCTATCCCAACCAAATGGGCGGCCAAAGCAGCAGAAACAACCCCTCACAATACTCTAGTCCTTCCCCCCATCATGTCTTCTTCAGTGTCTCTGCCATTATTGCCATTTCTGCTGCCATTTTGATTGCCCTTGGGGTGCTTGTAATCACCTTGCTCAATGTCTCCGCTCGGAGGAGATCGCTTGCCTTTGTCGACAATGCCTTGGAAAGCTGCTCGAGCTCTTCGAAATCAGGGACTGTCACTGCTGGTAAGCTTATTTTGTTTGATTCGAACTCGAGGGCATCGTCAAATTGGGTTAGTAACCATGAAGCCTTGCTGAACAAGGCCTCTGAGATTGGTGCTGGAGTTTTCGGAACGGTTTATAAGGTTTCACTGGGAGATGAAGGAGGAAGAGATGTAGCTATCAAGAAGCTTGTGAAATCAAACATGATTCAAAATCCAGAAGATTTCGACCGAGAAATCCGAATCTTGGGGAAGGTTAAACACCCTAATTTGATCAGCTTAAAGGGTTACTACTGGACTGCTCAAACTCAGCTGCTGGTAATGGAGTATGCTAGCAATGGAAGTCTTCAAACTCAACTCCATGGAAGGCTTCCTTCGGCTCCACCACTGTCTTGGGATAACAGGTTCAAGATTGTGCTTGGGACGGCCAAAGGACTAGCACATTTACACCACTCATTCCGCCCGCCAATCGTTCATTACGATCTGAAGCCAACTAACATTCTGCTGGACGAAAACTTCAACCCGAAGATCTCCGATTACGGGCTCGCAAGACTGCTAACAAAGCTTGACAAGCACGTGGTGAACAACAGATTCCAAAGTGCATTGGGGTACGTCGCACCAGAACTGGCATGCCAGAGCATAAGGGTGAACGAGAAATGTGACGTACACGGGTTCGGGGTGATGATTCTGGAGATCGTGACGGGACGAAGGCCGGTGGAGTATGGAGAAGACAATGTGGTTATATTGACAGATCATGTGAGGTATTTGCTTGAGAGAGGGAATGTGTTGGATTGTGTTGATCAAAGCATGACTCAATATTCAGAAGATGAAGTAGTGCCCATTCTCAAACTGGCTTTGGTTTGCACTTCTCAAATTCCTTCAAGTAGGCCTTCCATGGCTGAAGTTGTGCAGATTCTCCAAGTCATCAAGGCTCCACTTCCACAAAGAATACAAGGATTTTGA 3039 44.92 MAFLCFLALSLLGSMAILFQNCIAFNVVSPQLNDDILGLIVFKSDLHDPSSILSSWNEDDDSPCSWEFVKCNPINGRVSEVSIDGLGLSGRIGRGLEKLQHLKVLSLSGNNFTGNLSPQLSLPPSLDRVNFSRNSLSGRIPTSLISMSSIRFLDFSDNLLSGPLPDEMFLNCSSLHFLSLASNMLQGPVPNTLPTRCLYLNTLNLSANQFSGSLNFAPGVWSLTRLRTLDLSNNAFSGYLPQGVSAVHNLKELKLQNNQFTGPLPADLGLCIHLATLDVSRNRLTGPLPESMRLLTSLTFFNIGFNTFSGELPQWIGNMTSLEYLEFSSNGFTGSLPLAMGGLRSVKYMSFSNNKLSGNIPETLMECSELSVIKLEGNSLNGRVPEGLFELGLEEMVLSQNELIGSIPVGSSRLYEKLTRMDLSRNRLEGNFPAEMGLYRNLRYLNLSWNNFKTKIPPEMGLFQNLNVLDIRSSDLYGSIPGELCDSGSLGILQLDGNSLIGPIPDEIGNCLSLYLLSLSHNNLSGAIPKSISKLSKLEILRLESNQLSGEIPQELGILQNLLAVNISYNMLTGRLPVGGIFPSLDQSALQGNLGLCSPLLKGPCKMNVPKPLVLDPNAYPNQMGGQSSRNNPSQYSSPSPHHVFFSVSAIIAISAAILIALGVLVITLLNVSARRRSLAFVDNALESCSSSSKSGTVTAGKLILFDSNSRASSNWVSNHEALLNKASEIGAGVFGTVYKVSLGDEGGRDVAIKKLVKSNMIQNPEDFDREIRILGKVKHPNLISLKGYYWTAQTQLLVMEYASNGSLQTQLHGRLPSAPPLSWDNRFKIVLGTAKGLAHLHHSFRPPIVHYDLKPTNILLDENFNPKISDYGLARLLTKLDKHVVNNRFQSALGYVAPELACQSIRVNEKCDVHGFGVMILEIVTGRRPVEYGEDNVVILTDHVRYLLERGNVLDCVDQSMTQYSEDEVVPILKLALVCTSQIPSSRPSMAEVVQILQVIKAPLPQRIQGF 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30624312 30629243 - CcPI632755_07g016570.1 Cco07g1657 184310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1657 1012 SUPERFAMILY L domain-like 313 587 - -
Cco07g1657 1012 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 718 802 - -
Cco07g1657 1012 Pfam Leucine Rich Repeat 441 460 IPR001611 GO:0005515(InterPro)
Cco07g1657 1012 Pfam Leucine Rich Repeat 537 557 IPR001611 GO:0005515(InterPro)
Cco07g1657 1012 Pfam Leucine Rich Repeat 513 535 IPR001611 GO:0005515(InterPro)
Cco07g1657 1012 Pfam Leucine Rich Repeat 225 243 IPR001611 GO:0005515(InterPro)
Cco07g1657 1012 Pfam Leucine Rich Repeat 346 366 IPR001611 GO:0005515(InterPro)
Cco07g1657 1012 Pfam Leucine Rich Repeat 273 293 IPR001611 GO:0005515(InterPro)
Cco07g1657 1012 Pfam Leucine Rich Repeat 249 269 IPR001611 GO:0005515(InterPro)
Cco07g1657 1012 Pfam Leucine Rich Repeat 321 343 IPR001611 GO:0005515(InterPro)
Cco07g1657 1012 Pfam Leucine Rich Repeat 101 120 IPR001611 GO:0005515(InterPro)
Cco07g1657 1012 Gene3D Transferase(Phosphotransferase) domain 1 803 1008 - -
Cco07g1657 1012 ProSiteProfiles Protein kinase domain profile. 724 1001 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1657 1012 FunFam Inactive leucine-rich repeat receptor-like protein kinase 316 608 - -
Cco07g1657 1012 FunFam Inactive leucine-rich repeat receptor-like protein kinase 216 314 - -
Cco07g1657 1012 ProSiteProfiles Leucine-rich repeat profile. 441 463 IPR001611 GO:0005515(InterPro)
Cco07g1657 1012 SUPERFAMILY Protein kinase-like (PK-like) 727 1002 IPR011009 -
Cco07g1657 1012 Gene3D Phosphorylase Kinase; domain 1 709 802 - -
Cco07g1657 1012 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Cco07g1657 1012 SMART serkin_6 724 1001 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1657 1012 SUPERFAMILY L domain-like 50 385 - -
Cco07g1657 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 849 861 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1657 1012 CDD STKc_IRAK 730 999 - -
Cco07g1657 1012 PANTHER LEUCINE RICH REPEAT KINASE 2 306 1001 IPR051420 -
Cco07g1657 1012 ProSitePatterns Protein kinases ATP-binding region signature. 730 755 IPR017441 GO:0005524(InterPro)
Cco07g1657 1012 Gene3D Ribonuclease Inhibitor 30 91 IPR032675 -
Cco07g1657 1012 Gene3D Ribonuclease Inhibitor 366 611 IPR032675 -
Cco07g1657 1012 FunFam Leucine-rich repeat receptor-like protein kinase 32 191 - -
Cco07g1657 1012 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 803 1007 - -
Cco07g1657 1012 SMART LRR_typ_2 147 171 IPR003591 -
Cco07g1657 1012 SMART LRR_typ_2 247 271 IPR003591 -
Cco07g1657 1012 SMART LRR_typ_2 223 246 IPR003591 -
Cco07g1657 1012 SMART LRR_typ_2 99 123 IPR003591 -
Cco07g1657 1012 SMART LRR_typ_2 439 463 IPR003591 -
Cco07g1657 1012 SMART LRR_typ_2 535 559 IPR003591 -
Cco07g1657 1012 Gene3D Ribonuclease Inhibitor 92 365 IPR032675 -
Cco07g1657 1012 Pfam Protein kinase domain 726 996 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1657 Cco-Chr7:30624312 Cco10g0333 Cco-Chr10:3912633 4.70E-86 dispersed
Cco07g1657 Cco-Chr7:30624312 Cco10g2265 Cco-Chr10:35515033 1.30E-22 transposed
Cco07g1657 Cco-Chr7:30624312 Cco11g0578 Cco-Chr11:6196314 1.20E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86999 PF00069 Pkinase 2.30E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1657 - - - 0.0