Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1671 ATGGGGGATTACGCCACAACCTTGCTACTCACTTTCTTCTACCTCCATTTTCTCTCCCTCTCTGTTTTCGGCGACTCGCCACCGCCCTATAATGCTACCGACAATATACTTCTTAATTGTGGTTCCTCTGAAAATTCATCTGCATTTGGAGACGACCGCACCTGGGTCGGCGACGTCCAATCCAAATTCTTCTCTTCCGATTTCCATCACAACGGCGTATCCATCATTTCACAAGCTCAGACGCAGTCCTCTCCGGTCACTGGTGTCCCTTACATAACAGCACGCCTCTCCCGCTCTGAATTCACCTACTCTTTTTCGCTGAGTCCTGGCAAGAAATTCATTCGCCTTTACTTCTACCCTGCTTTCTACTCTAACTTCGACCGTTTCAAAGCTGTCTTCTCTGTCAAAACTGCTCTCCACACTCTTCTGGCCAATTTCAATGCTTCCCTCAATGCCGATGCTTCTGATCCTCCTTCCCCAACCATTACTCCTGAGTTTTGTGTTTATGCTGAGGGAAATGATCAAATGTTTAACATTACTTTCTCTCCCACAAATCAAGATTCTTATGCTTTTATCAATGGGATTGAGATTATATCCATGCCTCTAAATCTTTATTATCCCAAAAACGACAATGGTGGTAGGGGGTTGAACATCATCAACCAGAATAGTCAGTTTCGCCTAATTGATAACAACACGTCTCTTGAGAGGGTATACAGGATGAATATTGGCGGAAATCCCATCTCCCCTGTTAACGACACTGGAATGTTTCGGACTTGGACAGAGGAAAGTAATTTGTTGAATGGATATGTATATGATGCTCGACCTGCTGACTTATCTTTACAACTCGATTATATTAATATACCGCCATACATGGCGCCAGGAAATGTGTATCGCACTGCTCGGACCATGGGTCCAAATACTACGCTTAATAAGAGCTACAACCTCACATGGGAGTACCCTGTAGATCCTGGGTTCCATTACATGCTCCGCCTTCATTTCTGTGAGTTTGAAGCTGAAATCACTGCTGCAGGTGACAGAGTATTCTTGATTTATATTGGAAACAATATGGCTGACCAAGGAATCGATGTATTTCAACGGGCCGGAGGGAAAGGTCGTCCTATGTATGAAGATTATGGTATTTTTGTGTCTAATACCAATCAAAAGAAGGTGAATCTCTCTGTAAAGCTTCAAGCAAACCCAGATGACGCTAAGACGAGATTGAACAACGTGATCTTGAATGGTGTTGAAATCTTCAAAATAAACGATTTGAATGGTAACCTTGGTGGCCAAAACCCAGATCCACCTCCCACTACACCCGCCCAATCTCTTCCACCATCCATCCCACAATCGAACAATTCATCAAATACTAAAATTGTGGGAATTGTAATACCTGTCGTGGTTGGAGGTGTGGTGGCAATATTGGCTCTGGGTTTGTTTTTATTTCGACGACGCAAAACATTTACAGATCAAACCTCCAGTGATGGAACTTCGTGGTGGGCTTCAAACTTGACATGGACGAACAAATCAAACAAATCAAGTAAGACCCGTAACTCAAATCTGCCTTCTGATATATGTCGACACTTTTCATTGGGGGAGATTAAAGACGCTACAAAGAATTTTGATGAAATTTTCATAATTGGTGTTGGGGGATTTGGTAACGTGTACAAAGGTTACATTGACGATGGAGCCACCCAAGTGGCCATTAAGCGGTTGAAACCAGGTTCAAAACAGGGGGCGCATGAGTTCAAGACAGAGATTGAGATGCTCTCGCAACTTCGTCATCTCCATCTCGTCTCCCTAATTGGATATTGTAACGATGGAAATGAAATGATTCTTGTGTATGATTACATGTCCCATGGAACTCTCCGTAGTCACCTCTATGGGAATGACGAACAACAACCTCTCACATGGAATCAACGTCTCCAAATTTGCATTGGAGCAGCAAAAGGGTTACACTACCTCCACACAGGAGCCAATCACACCATCATCCACCGCGACGTCAAAACCACTAATATTTTACTTGATGAAAAATGGATTGCAAAAGTTTCGGATTTCGGATTATCGAAAGTCGGGCCAGCAAACATGCTCAATAATGCACACATTAGCACAGTTGTTAAAGGCAGTTTCGGATACTTAGACCCAGAGTACTACAGACGACAACAACTAACCGAAAAATCTGATGTATATTCATTCGGGGTAGTTCTTTGTGAAGTACTTTGCGCTCGTCCACCATTGATACGTGCTGCAGACAAGAAGCAAGTGTACCTAGCAGAGTGGGTACGACGGTGCCACCGCGACAACACGGTGGCTCAAACCATTGACCCCAACATTAAAAATGAGATATCGCCAGAATGCTTGAGAAAGTTCATAGAGATCGCTGTGGGTTGCATTGAAGACGATGGCATAAAGCGGCCATCGATGAACGACGTGGTGTGGGGATTGGAGTTTGCATTGAAATTACAAGAGGCATCGAAGAAGAAGGGAGCGGAAGATGATGTGGGGAGCGGCGAAGAACAGTGGTTTCTGGATGAAACATTGTTTAGTAGTACCGGTGATGGGAGACACGACTCAGAGTCGGGGGTGAGCAGTTATGTGACAACAACCAATAGCAATGATTTGAGTTATACACAGAATAAAGGAATGTCCGGTACTGTCTTTTCTGAGATTAATGACCCTATCGGGAGATGA 2688 43.9 MGDYATTLLLTFFYLHFLSLSVFGDSPPPYNATDNILLNCGSSENSSAFGDDRTWVGDVQSKFFSSDFHHNGVSIISQAQTQSSPVTGVPYITARLSRSEFTYSFSLSPGKKFIRLYFYPAFYSNFDRFKAVFSVKTALHTLLANFNASLNADASDPPSPTITPEFCVYAEGNDQMFNITFSPTNQDSYAFINGIEIISMPLNLYYPKNDNGGRGLNIINQNSQFRLIDNNTSLERVYRMNIGGNPISPVNDTGMFRTWTEESNLLNGYVYDARPADLSLQLDYINIPPYMAPGNVYRTARTMGPNTTLNKSYNLTWEYPVDPGFHYMLRLHFCEFEAEITAAGDRVFLIYIGNNMADQGIDVFQRAGGKGRPMYEDYGIFVSNTNQKKVNLSVKLQANPDDAKTRLNNVILNGVEIFKINDLNGNLGGQNPDPPPTTPAQSLPPSIPQSNNSSNTKIVGIVIPVVVGGVVAILALGLFLFRRRKTFTDQTSSDGTSWWASNLTWTNKSNKSSKTRNSNLPSDICRHFSLGEIKDATKNFDEIFIIGVGGFGNVYKGYIDDGATQVAIKRLKPGSKQGAHEFKTEIEMLSQLRHLHLVSLIGYCNDGNEMILVYDYMSHGTLRSHLYGNDEQQPLTWNQRLQICIGAAKGLHYLHTGANHTIIHRDVKTTNILLDEKWIAKVSDFGLSKVGPANMLNNAHISTVVKGSFGYLDPEYYRRQQLTEKSDVYSFGVVLCEVLCARPPLIRAADKKQVYLAEWVRRCHRDNTVAQTIDPNIKNEISPECLRKFIEIAVGCIEDDGIKRPSMNDVVWGLEFALKLQEASKKKGAEDDVGSGEEQWFLDETLFSSTGDGRHDSESGVSSYVTTTNSNDLSYTQNKGMSGTVFSEINDPIGR 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30730161 30732848 - CcPI632755_07g016710.1 Cco07g1671 184324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1671 895 FunFam FERONIA receptor-like kinase 232 421 - -
Cco07g1671 895 Pfam Malectin-like domain 38 420 IPR024788 -
Cco07g1671 895 FunFam Receptor-like protein kinase FERONIA 617 835 - -
Cco07g1671 895 MobiDBLite consensus disorder prediction 425 450 - -
Cco07g1671 895 Pfam Protein tyrosine and serine/threonine kinase 546 811 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1671 895 SUPERFAMILY Protein kinase-like (PK-like) 513 816 IPR011009 -
Cco07g1671 895 ProSitePatterns Protein kinases ATP-binding region signature. 546 569 IPR017441 GO:0005524(InterPro)
Cco07g1671 895 ProSiteProfiles Protein kinase domain profile. 540 817 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1671 895 FunFam FERONIA receptor-like kinase 35 201 - -
Cco07g1671 895 CDD STKc_IRAK 546 811 - -
Cco07g1671 895 Gene3D - 233 421 - -
Cco07g1671 895 Gene3D - 35 201 - -
Cco07g1671 895 Gene3D Phosphorylase Kinase; domain 1 500 616 - -
Cco07g1671 895 MobiDBLite consensus disorder prediction 849 877 - -
Cco07g1671 895 PANTHER OS03G0124300 PROTEIN-RELATED 8 484 IPR045272 GO:0004714(InterPro)|GO:0006468(InterPro)
Cco07g1671 895 Gene3D Transferase(Phosphotransferase) domain 1 617 838 - -
Cco07g1671 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1671 895 SMART serkin_6 540 817 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1671 895 FunFam Receptor-like protein kinase FERONIA 512 616 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1671 Cco-Chr7:30730161 Cco07g1673 Cco-Chr7:30740199 0.00E+00 dispersed
Cco07g1671 Cco-Chr7:30730161 Cco07g1672 Cco-Chr7:30733302 0.00E+00 tandem
Cco11g0499 Cco-Chr11:5234949 Cco07g1671 Cco-Chr7:30730161 4.50E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87001 PF12819 Malectin_like 6.30E-42 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1671 - - - 0.0