Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1676 ATGAGGTTGTTCATTTCAGCTGTCTTCCTTTTTGTCTTATTTTCTCATGGAGCTGCATATGATCCGTTGGATCCGAATGGGAACATTACGATCAAATGGGACATCATGTCTTGGACGCCTGATGGCTATGTGGCGGTAGTTACGTTGAACAACTTCCAAATGTACCGGCATATAATGAGCCCTGGGTGGACGATGGGGTGGACTTGGGCAAAAAAGGAAGTGATATGGTCGATGGTGGGGTCGCAGACGACGGAGCAAGGCGACTGCTCCAAGTTCAAAGGAAACATTCCTCACTGCTGCAAGAAAAACCCCACCGTTGTGGATTTGATGCCTGGAGTTCCTTACAACCAACAATTTACGAACTGCTGCAAAGGTGGGGTTGTGGCTGCTTGGGGACAAGACCCTCAAGCTGCTGTTTCAGCCTTTCAGCTTAGTGTTGGCCAAGCAGGTACTTCAAACAAGACTGTCAAGCTCCCCAAGAACTTCACTTTGCTTGGTCCCGGCCCCGGATACACTTGTGGACCTGCAAAGGTTGTGCCTTCCACCACTTTCCTCACACCTGACCGCCGCCGCAAAACTCAAGCTCTGATGACTTGGAATGTGACCTGCACTTACTCTCAGTTTCTATCAAGAAAGAATCCTAATTGTTGTGTTTCTTTCTCGTCTTTCTACAACGATACGATCACATCTTGTCCGTCTTGCGCCTGTGGTTGCCAAAACAAGAACAACTGTGTCCAGAGTGATTCTAAGATTCTTAAGCTGGTTGGAATCAATACACCAAGGAAAGACAATGCCCCGTTGCTGCATTGCACACATCACATGTGCCCCGTTCGAGTTCACTGGCATGTAAAGCAAAATTACAAAGAATATTGGCGGGTGAAGATCGCCATCACAAACTTCAACTACCGAATGAACTATTCGCTTTGGTCTCTCGTTGTCCAGCACCCAAATCTGAACAATGTAACCCAAGTTTTCAGCTTCGACTACAAACCACTTGTTCCCTATGGATCAATCAACGACACAGGAATGTTTTACGGGATGAAGTTCTATAACGACCTTCTCATGGAAGCGGGGCCATTTGGGAATGTACAATCAGAGGTGTTGCTGCAAAAGGACCAGAACACCTTCACTTTCAAGCAAGGATGGGCATTCCCTCGAAAAGTTTACTTCAATGGTGACGAGTGCATGCTTCCACCACCCGATACATACCCATTCCTGCCAAACGCTGCCCGGGAAAGGCCAGTTGCCGTCTCATCTTCAATTGCTTTGTTGCTGCTCTTCATGCTGCTAGCTATTTGCTGA 1302 47.39 MRLFISAVFLFVLFSHGAAYDPLDPNGNITIKWDIMSWTPDGYVAVVTLNNFQMYRHIMSPGWTMGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNIPHCCKKNPTVVDLMPGVPYNQQFTNCCKGGVVAAWGQDPQAAVSAFQLSVGQAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTTFLTPDRRRKTQALMTWNVTCTYSQFLSRKNPNCCVSFSSFYNDTITSCPSCACGCQNKNNCVQSDSKILKLVGINTPRKDNAPLLHCTHHMCPVRVHWHVKQNYKEYWRVKIAITNFNYRMNYSLWSLVVQHPNLNNVTQVFSFDYKPLVPYGSINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLLQKDQNTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNAARERPVAVSSSIALLLLFMLLAIC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30755228 30756973 - CcPI632755_07g016760.1 Cco07g1676 184329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1676 433 PANTHER PROTEIN COBRA 6 426 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cco07g1676 433 PIRSF COBRA 1 433 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cco07g1676 433 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1676 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1753 Cco-Chr1:30284527 Cco07g1676 Cco-Chr7:30755228 1.20E-161 dispersed
Cco06g1747 Cco-Chr6:27963746 Cco07g1676 Cco-Chr7:30755228 4.30E-223 dispersed
Cco07g1675 Cco-Chr7:30751789 Cco07g1676 Cco-Chr7:30755228 5.40E-183 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1748 . 48 447 COBRA Gene Family AT5G60920 80.0 2.3e-209 724.9
Cco07g1675 . 44 450 COBRA Gene Family AT5G60920 75.2 5.8e-200 693.7
Cco06g1747 . 55 450 COBRA Gene Family AT5G60920 69.5 6.6e-180 627.1
Cco07g1676 . 31 426 COBRA Gene Family AT5G60920 68.0 1.9e-179 625.5
Cco01g1753 . 201 591 COBRA Gene Family AT5G60920 58.4 1.6e-146 516.2
Cco05g1112 . 31 430 COBRA Gene Family AT5G60920 54.6 2.8e-130 462.2
Cco06g1748 . 22 451 COBRA Gene Family AT3G02210 74.4 6.6e-205 710.3
Cco07g1675 . 19 448 COBRA Gene Family AT3G02210 74.7 5.6e-204 707.2
Cco07g1676 . 5 429 COBRA Gene Family AT3G02210 66.4 2.8e-179 625.2
Cco06g1747 . 27 451 COBRA Gene Family AT3G02210 66.3 1.4e-178 622.9
Cco01g1753 . 187 587 COBRA Gene Family AT3G02210 58.1 5.6e-148 521.2
Cco05g1112 . 1 428 COBRA Gene Family AT3G02210 54.4 7.4e-140 494.2
Cco06g1748 . 21 446 COBRA Gene Family AT3G29810 75.5 1.0e-202 703.0
Cco07g1675 . 29 448 COBRA Gene Family AT3G29810 72.6 6.0e-195 677.2
Cco07g1676 . 14 428 COBRA Gene Family AT3G29810 66.0 2.8e-176 615.1
Cco06g1747 . 38 436 COBRA Gene Family AT3G29810 67.2 1.2e-174 609.8
Cco01g1753 . 187 591 COBRA Gene Family AT3G29810 56.8 9.7e-145 510.4
Cco05g1112 . 13 430 COBRA Gene Family AT3G29810 55.1 3.6e-139 491.9
Cco02g0474 . 641 1049 COBRA Gene Family AT3G29810 50.1 2.2e-120 429.5
Cco06g1747 . 32 363 COBRA Gene Family AT5G15630 83.1 4.0e-178 620.9
Cco07g1676 . 9 339 COBRA Gene Family AT5G15630 82.2 2.2e-176 615.1
Cco06g1748 . 31 361 COBRA Gene Family AT5G15630 73.5 1.2e-150 529.6
Cco07g1675 . 29 358 COBRA Gene Family AT5G15630 68.2 1.7e-144 509.2
Cco01g1753 . 184 498 COBRA Gene Family AT5G15630 60.2 4.1e-127 451.4
Cco05g1112 . 19 341 COBRA Gene Family AT5G15630 50.6 3.4e-97 352.1
Cco06g1748 . 19 224 COBRA Gene Family AT5G60950 57.0 5.1e-64 241.1
Cco07g1675 . 27 220 COBRA Gene Family AT5G60950 59.5 1.1e-63 240.0
Cco06g1747 . 51 231 COBRA Gene Family AT5G60950 58.6 1.9e-58 222.6
Cco07g1676 . 27 207 COBRA Gene Family AT5G60950 57.5 1.9e-58 222.6
Cco05g1112 . 12 413 COBRA Gene Family AT1G09790 60.5 1.4e-151 533.1
Cco07g1675 . 25 428 COBRA Gene Family AT1G09790 54.3 1.2e-134 476.9
Cco06g1747 . 41 434 COBRA Gene Family AT1G09790 53.7 3.9e-133 471.9
Cco06g1748 . 32 432 COBRA Gene Family AT1G09790 53.3 5.6e-132 468.0
Cco07g1676 . 3 410 COBRA Gene Family AT1G09790 51.3 3.4e-129 458.8
Cco05g0753 . 34 643 COBRA Gene Family AT4G16120 66.7 1.2e-255 879.4
Cco10g0528 . 57 665 COBRA Gene Family AT4G16120 54.3 6.6e-206 714.1
Cco05g1672 . 1 453 COBRA Gene Family AT4G16120 55.9 2.0e-162 569.7
Cco05g0753 . 11 649 COBRA Gene Family AT3G16860 63.1 3.0e-243 838.2
Cco10g0528 . 57 654 COBRA Gene Family AT3G16860 52.8 1.2e-194 676.8
Cco05g1672 . 1 454 COBRA Gene Family AT3G16860 53.5 2.5e-149 526.2
Cco05g0753 . 7 639 COBRA Gene Family AT5G49270 61.0 7.1e-240 827.0
Cco10g0528 . 57 652 COBRA Gene Family AT5G49270 52.3 3.0e-198 688.7
Cco05g1672 . 4 474 COBRA Gene Family AT5G49270 52.1 1.5e-152 537.0
Cco10g0528 . 56 672 COBRA Gene Family AT3G20580 63.1 2.6e-250 861.7
Cco05g0753 . 27 627 COBRA Gene Family AT3G20580 54.9 3.0e-206 715.3
Cco05g1672 . 1 469 COBRA Gene Family AT3G20580 64.8 9.8e-197 683.7
Cco10g0528 . 57 673 COBRA Gene Family AT4G27110 63.6 6.2e-244 840.5
Cco05g0753 . 24 645 COBRA Gene Family AT4G27110 51.9 2.3e-198 689.1
Cco05g1672 . 1 441 COBRA Gene Family AT4G27110 66.4 7.7e-186 647.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73