Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1705 ATGGGTTCTTCGTCTTCTTTTTCAGTCATCAAATGGTTCTCTTTCTGCAGACCCACCTCTCCAATTCTTCTTTCCAAGCTCTTTTTGCTCTTCTCTATCCTCTTCTTCTTTCAGTCTGATGTTATTTTCGGCGATTCCGACAAATCCGTCCTTCTTCAGTTCAAAAATGCTCTTTCCGACCCATCCGCCTTGCTTTCCACCTGGACGCCCACTGGTTCTGACTACTGCTTCTGGTTTGGCGTTTCCTGCGACTTCAATTCTCGGGTTGTCTCTCTCAACATTTCTGGGAATGGTGGTTCAGGTAATTCCAATGCCTTTACCTGCTCTGTTTCTTCTAAATTCCCTCTTTATGGACTTGGAATCAGGAGGGGTTGTGTGGCTAATAGAGGCCTACTCATTGGCAAGCTTCCGCCGGTTATTGGGAACCTCACTCAGCTCAGGACTTTGTCTCTTCCGTTTCATGCTTTTGAGGGTGAGCTTCCTCGTGAAATCTTTGGATTGGAGAACCTTGAGGTTCTTGATCTGGAAGGGAACTCTGTCACTGGGTTGCTTCCTAATGATTTTGCCAGGCTGAGCAAGTTGCGTGTTCTCAATCTTGCATTCAATAAGCTTACTGGTGAGATTCCTAGCTCGCTTTCGGGTTGTCAGAGTTTAGAGATCTTGAATTTAGCTGGGAATCAGTTGAATGGGACAATTCCACAGTTTGTTGGTCATTTGAGAGGGGTCTACTTGTCTTTCAATTTTTTTACGGGATCCATTCCGAGTGAGCTTGGGAATAACTGTGAAAAGCTTGAGCATCTCGACCTATCTGGTAATTTTTTGGTCAGTGGGATTCCAAGCAATCTGGGAAATTGCACACAGTTGCAGACATTGTTGCTGTATTCCAATATGCTGGAGGAGGCCATTCCAGCTGGAATTGGTAAGTTGCACAAGCTGGAAGTGCTCGATCTTTCGAGGAATAGCCTCAGTGGTCCAATACCCTCCGAGCTAGGAAATTGCTTGCAGTTGTCTGTCCTCGTGCTCTCGAATCTCTTCAATCCAATTCCCAAGATCAACTACACAGATGGCGACTCTCCAACTGAGGAACTTAGTGATGATAGTTTTAACTATTTTGCGGGTGGTATACCTGAGACAATAACAGCCCTTCCAAAGCTGAGGATATTGTGGGCCCCTAGTGCAAACCTCAATGGCAGATTCCCTTCCCAATGGGGTAAGTGCGAAAGCTTGGAGATGATCAACTTAGCTGGTAATTACCTTTATGGGGAGCTTCCCAGTGGGTTTAGCGTCTGCAACAAGCTTCAAGTCCTTGATTTAAGCTCAAACCGGCTTTCTGGAGAACTTGATAAAAACCTACCAGTTCCTTACATGACTCTGTTTGATCTTAGCCATAACCACTTTATTGGTGAGATTCCTACGTTCTGTGGCAATGATTGCTCACCACCAATGTTCCGTTTAAATGGATATTTGGATCTTGACGATGCCTCGTCTCGGTATCTAGCATTTTTTGCCACTAGTATTCGAAATGCAACCCCTTTTGAATTTATTGGAAATGGTGATCTGATAATACATAACTTTGGGGACAATAACTTTACAGGCAATCTTCTGTCATTGCCGTTTCCACGTGATAGTCTGGGAAGGAAAACTGTTTATGCTTATCTTGTAGGTGGGAATAAGCTGACTGGACCATTTCCAGATAGTTTGTTTGAGAAATGTGACGATTTGGGGGGATTGATCTTTAATATTAGCAGCAATAAAATATCTGGTCCTTTTTCTGTGACAATTGGTAAGAAGTGTGGTTCTCTCAAATTCTTGGATGCATCTGGTAATCAGATGATTGGGCAGGTACCTGCTAGCTTTGGAGAGCTACTATCTCTGAATCACCTGAACCTAAGTTGGAACAAGTTTCAGTATCAAATACCTACTTCTCTCGGACATATGGCTGATTTGAAGTACCTTTGTTTGGCTGGCAATAACTTTAATGGTTCTATACCTTCTACCTTGGGAAAGTTGAAGTCTTTGGAGTTGCTGGATCTTTCATATAACGATCTTTCGGGTGAAATTCCAATAGATCTTGTTAACTTGAGAGGCCTAAAAGTTCTGCTGCTCAACAATAATTCACTCTCTGGACAGGTTCCCTCTGGTTTAGCAAATGTTACCACACTCTCTGCATTTAATGTGTCATTCAATAATTTGTCTGGTTCCCTGCCATCAAATAACAACATGATTAAATGTAGTGGTGCAATTGGAAATCCTTACCTTCGCCCGTGCCATATGTATTCTCTGGCAGTACCCTCATCCGAAATGCAAGGTTCATATGGTGACCCAAGTAGTTTTGCAGCTTCACCGTCTGGTGTTGCACCCCAAACAAGTGGAGGTGGCAGCTTCAATTCCATTGAGATAGCATCCATTACGTCTGCCTCTGCCATTGTTTCTGTTCTTATTGCTTTGATTATCCTATTTCTATATACACGAAAGTGGAACTCGAGATCTAAAGTTCTTGGCTCAATGAGAAAGGAAGTGACGGTTTTTACTGATATTGGGGTTTCCCTGACGTTTGAGAATGTGGTGCGTGCTACAAGTAATTTCAATGCAAGCAACTGCATTGGCAGTGGAGGGTTTGGGGCAACTTACAAGGCAGAGATCTCGTCAGGAGTGCTGGTTGCAATAAAACGACTTGCTGTAGGTCGATTTCAAGGTGTCCAACAGTTCGATGCAGAAATTAAAACTCTTGGAAGGCTGCGCCATCCAAACCTTGTCACCTTAATTGGTTACCATGCCAGTGAAACAGAGATGTTCCTGATATATAATTATTTGCCTGGAGGTAATTTGGAAAAATTCATCCAGGAGAGGTCTACAAGAGCAGTTGATTGGAGAATTCTTCACAAGATTGCACTGGACATAGCCCGTGCGCTCGCGTATCTTCATGATCAGTGTGTACCACGAGTCCTCCACCGCGATGTGAAACCGAGCAATATACTATTAGATGATGATTTCAATGCTTATCTCTCTGATTTTGGATTGGCCAGGCTTCTTGGGACTTCTGAAACCCATGCTACAACCGGTGTGGCTGGAACTTTCGGCTATGTCGCTCCTGAATATGCCATGACTTGCCGTGTCTCTGATAAAGCAGACGTGTACAGTTATGGTGTGGTGCTTCTCGAGCTACTCTCAGACAAGAAAGCACTAGATCCCTCGTTTTCCTCGTATGGTAATGGGTTTAACATAGTAGCTTGGGCATGTATGCTGCTTCGGCAGGGGCGCGCCAAGGAATTCTTCACGGCAGGGTTATGGGAGGTAGGCCCCCATGATGATTTAGTTGAAGTTTTACATTTGGCAGTTGTTTGTACAGTTGACTCTCTGTCAACTAGGCCGACGATGAAGCAAGTCGTACGACGGCTTAAGCAGCTTCAACCGCCATCATGTTAG 3426 44.07 MGSSSSFSVIKWFSFCRPTSPILLSKLFLLFSILFFFQSDVIFGDSDKSVLLQFKNALSDPSALLSTWTPTGSDYCFWFGVSCDFNSRVVSLNISGNGGSGNSNAFTCSVSSKFPLYGLGIRRGCVANRGLLIGKLPPVIGNLTQLRTLSLPFHAFEGELPREIFGLENLEVLDLEGNSVTGLLPNDFARLSKLRVLNLAFNKLTGEIPSSLSGCQSLEILNLAGNQLNGTIPQFVGHLRGVYLSFNFFTGSIPSELGNNCEKLEHLDLSGNFLVSGIPSNLGNCTQLQTLLLYSNMLEEAIPAGIGKLHKLEVLDLSRNSLSGPIPSELGNCLQLSVLVLSNLFNPIPKINYTDGDSPTEELSDDSFNYFAGGIPETITALPKLRILWAPSANLNGRFPSQWGKCESLEMINLAGNYLYGELPSGFSVCNKLQVLDLSSNRLSGELDKNLPVPYMTLFDLSHNHFIGEIPTFCGNDCSPPMFRLNGYLDLDDASSRYLAFFATSIRNATPFEFIGNGDLIIHNFGDNNFTGNLLSLPFPRDSLGRKTVYAYLVGGNKLTGPFPDSLFEKCDDLGGLIFNISSNKISGPFSVTIGKKCGSLKFLDASGNQMIGQVPASFGELLSLNHLNLSWNKFQYQIPTSLGHMADLKYLCLAGNNFNGSIPSTLGKLKSLELLDLSYNDLSGEIPIDLVNLRGLKVLLLNNNSLSGQVPSGLANVTTLSAFNVSFNNLSGSLPSNNNMIKCSGAIGNPYLRPCHMYSLAVPSSEMQGSYGDPSSFAASPSGVAPQTSGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVLGSMRKEVTVFTDIGVSLTFENVVRATSNFNASNCIGSGGFGATYKAEISSGVLVAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTAGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31052254 31055679 - CcPI632755_07g017050.1 Cco07g1705 184358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1705 1141 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 826 937 - -
Cco07g1705 1141 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 518 761 - -
Cco07g1705 1141 SMART serkin_6 862 1140 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1705 1141 ProSitePatterns Serine/Threonine protein kinases active-site signature. 982 994 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1705 1141 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 363 447 - -
Cco07g1705 1141 SUPERFAMILY L domain-like 554 757 - -
Cco07g1705 1141 Gene3D Transferase(Phosphotransferase) domain 1 938 1138 - -
Cco07g1705 1141 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 938 1140 - -
Cco07g1705 1141 ProSitePatterns Protein kinases ATP-binding region signature. 868 890 IPR017441 GO:0005524(InterPro)
Cco07g1705 1141 Pfam Protein kinase domain 865 1063 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1705 1141 Gene3D Ribonuclease Inhibitor 44 237 IPR032675 -
Cco07g1705 1141 CDD STKc_IRAK 868 1136 - -
Cco07g1705 1141 PRINTS Leucine-rich repeat signature 670 683 - -
Cco07g1705 1141 PRINTS Leucine-rich repeat signature 433 446 - -
Cco07g1705 1141 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 28 108 IPR052592 -
Cco07g1705 1141 Pfam Leucine rich repeat 169 228 IPR001611 GO:0005515(InterPro)
Cco07g1705 1141 SUPERFAMILY RNI-like 135 472 - -
Cco07g1705 1141 Pfam Leucine rich repeat N-terminal domain 45 84 IPR013210 -
Cco07g1705 1141 SUPERFAMILY Protein kinase-like (PK-like) 847 1133 IPR011009 -
Cco07g1705 1141 Pfam Leucine Rich Repeat 311 333 IPR001611 GO:0005515(InterPro)
Cco07g1705 1141 Pfam Leucine Rich Repeat 238 259 IPR001611 GO:0005515(InterPro)
Cco07g1705 1141 Pfam Leucine Rich Repeat 649 670 IPR001611 GO:0005515(InterPro)
Cco07g1705 1141 Pfam Leucine Rich Repeat 624 646 IPR001611 GO:0005515(InterPro)
Cco07g1705 1141 Pfam Leucine Rich Repeat 432 451 IPR001611 GO:0005515(InterPro)
Cco07g1705 1141 Pfam Leucine Rich Repeat 672 694 IPR001611 GO:0005515(InterPro)
Cco07g1705 1141 Pfam Leucine Rich Repeat 263 285 IPR001611 GO:0005515(InterPro)
Cco07g1705 1141 Pfam Leucine Rich Repeat 697 717 IPR001611 GO:0005515(InterPro)
Cco07g1705 1141 Gene3D Ribonuclease Inhibitor 363 479 IPR032675 -
Cco07g1705 1141 Gene3D Ribonuclease Inhibitor 238 362 IPR032675 -
Cco07g1705 1141 Gene3D Ribonuclease Inhibitor 492 754 IPR032675 -
Cco07g1705 1141 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 259 349 - -
Cco07g1705 1141 Gene3D Phosphorylase Kinase; domain 1 824 937 - -
Cco07g1705 1141 SMART LRR_typ_2 622 646 IPR003591 -
Cco07g1705 1141 SMART LRR_typ_2 309 333 IPR003591 -
Cco07g1705 1141 SMART LRR_typ_2 167 190 IPR003591 -
Cco07g1705 1141 SMART LRR_typ_2 191 215 IPR003591 -
Cco07g1705 1141 SMART LRR_typ_2 261 285 IPR003591 -
Cco07g1705 1141 SMART LRR_typ_2 236 260 IPR003591 -
Cco07g1705 1141 SMART LRR_typ_2 670 694 IPR003591 -
Cco07g1705 1141 ProSiteProfiles Protein kinase domain profile. 862 1136 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1705 Cco-Chr7:31052254 Cco05g2590 Cco-Chr5:34157701 1.10E-59 dispersed
Cco01g0825 Cco-Chr1:8690719 Cco07g1705 Cco-Chr7:31052254 3.90E-11 transposed
Cco11g0541 Cco-Chr11:5714802 Cco07g1705 Cco-Chr7:31052254 2.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87004 PF00069 Pkinase 9.90E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1705 - - - 0.0