Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1724 ATGGGGGATTCAGCTGAAGATCTTCAAAATGACCTCAAATTTCACGGTCCGATCGATGGCAACGTTCTCGCCGCCATGGCGCTGGCTCGCTGCGGCGTCGACCGGATGTTCGGCGTCGTCGGAATCCCTGTTACCTCTCTGGCTACTCGCGCAGTTTCTTTGGGAATTCGATTCATCGCCTTTCATAACGAACAATCGGCTGGCTATGCCGCTTCTGCTTATGGATATCTAACGGGCCGCCCTGGTGTGCTGCTTACTGTTTCTGGCCCTGGTTGTGTTCATGGCCTTGCGGGGCTTTCTAACGCCATGGCTAATGCTTGGCCTTTGGTGATGATTTCTGGTTCTTGCGATCAGAGAGATTTCGGCCGTGGTGATTTTCAGGAGCTTGATCAGGTTGAAGCTGTTAAGCCCTTTTCGAAATTTTCCGTAAAGGCCACGGATATTTCCGAGATTCCGAATTGCGTTGCTCGAGTTCTTAATTCGGCCGTTTCTGGTCGGCCTGGTGGGTGCTATTTTGATCTTCCTTCGGATGTTTTGCATCAGACTGTTTCCGAGTCTGAGGCGGAGAGATTATTGGCCGCAGCGAAGGTGTTTACACACCGCGAAGTGATTCATAGAGTTCCGAATTCGCAGATTGAGGAAGCGATTTCGTTGTTGAAACATGCGGAACGACCATTGATTGTGTTTGGTAAAGGGGCGGCGATTGCTCGTGCTGAGGGGCCGTTGAAGAAGCTTGTGGAGAGCACTGGGATTCCATTTCTTCCTACTCCAATGGGCAAAGGGTTGTTGCCTGATACACATGAGCTAGCGGCTACCGCCGCTAGGTCATTGGCGATTGGTAAGTGCGATGTTGCGCTTGTGGTTGGGGCAAGACTTAATTGGTTGTTGCATTTTGGCGAGCCACCTAAATGGTCCAAGGATGTGAAGTTCATTTTGGTTGATATTTGCAAGGAGGAGGTTGAATTAAGAAAGCCCCATTTGGGTTTGATTGGCGATGCAAAAGAGGTATTGGAATCCATAAACAGGGAGATTAAGGATAACCCATTTTGTCTTGGAAAATCTCACCCATGGGTTGAAGCCATTTCGCAGAAGGCAAAGGACAATGTGGCGAAAATGGAAGTTCAGCTGGCGAGGGATGTTGTGCCATTCAATTTCTTGACGCCAATGAGAATCATTCGAGATGCTCTTTCGGCTCTCGGCAGCCCTGCGCCCATATTGGTCTCTGAAGGGGCCAATACAATGGATGTGGGTCGCTCAGTTTTGGTTCAGACTGAGCCAAGATCCAGGTTGGATGCTGGAACATGGGGCACAATGGGGGTTGGCTTGGGCTATTGCATTGCAGCTGCTGTTGCTTCACCTGATCGATTGGTAGTCGCTGTGGAAGGCGATTCTGGATTTGGGTTCAGTGCCATGGAAGTTGAGACTCTGGTGCGGTACCAATTGCCAGTGATTGTGATAGTTTTTAACAATGGCGGTGTATATGGTGGCGACCGGAGAACACCACAAGAAATTACCGGACCTTATAAGCACGATCCTGCACCAACCTCCTTTGTCCCATCAGCAAATTATCACAAAATGATTGAGGCTTTTGGAGGTAAAGGATACTATGTTGAAACACCCGAGGAACTAAAATCTGCACTAGCTGAGTCCTTTTCTGCTCGGAAACCAGCAGTTGTAAACGTCAAGATCGATCCTTATGCCGGTGCAGAAAGTGGGAGGCTGGAACACAAGAACTGA 1737 49.34 MGDSAEDLQNDLKFHGPIDGNVLAAMALARCGVDRMFGVVGIPVTSLATRAVSLGIRFIAFHNEQSAGYAASAYGYLTGRPGVLLTVSGPGCVHGLAGLSNAMANAWPLVMISGSCDQRDFGRGDFQELDQVEAVKPFSKFSVKATDISEIPNCVARVLNSAVSGRPGGCYFDLPSDVLHQTVSESEAERLLAAAKVFTHREVIHRVPNSQIEEAISLLKHAERPLIVFGKGAAIARAEGPLKKLVESTGIPFLPTPMGKGLLPDTHELAATAARSLAIGKCDVALVVGARLNWLLHFGEPPKWSKDVKFILVDICKEEVELRKPHLGLIGDAKEVLESINREIKDNPFCLGKSHPWVEAISQKAKDNVAKMEVQLARDVVPFNFLTPMRIIRDALSALGSPAPILVSEGANTMDVGRSVLVQTEPRSRLDAGTWGTMGVGLGYCIAAAVASPDRLVVAVEGDSGFGFSAMEVETLVRYQLPVIVIVFNNGGVYGGDRRTPQEITGPYKHDPAPTSFVPSANYHKMIEAFGGKGYYVETPEELKSALAESFSARKPAVVNVKIDPYAGAESGRLEHKN 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31237759 31240520 - CcPI632755_07g017240.1 Cco07g1724 184377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1724 578 Pfam Thiamine pyrophosphate enzyme, central domain 212 339 IPR012000 GO:0000287(InterPro)|GO:0030976(InterPro)
Cco07g1724 578 Gene3D - 18 197 - -
Cco07g1724 578 SUPERFAMILY DHS-like NAD/FAD-binding domain 209 366 IPR029035 -
Cco07g1724 578 CDD TPP_BZL_OCoD_HPCL 385 564 - -
Cco07g1724 578 PANTHER 2-HYDROXYACYL-COA LYASE 18 578 IPR045025 GO:0001561(PANTHER)|GO:0005777(PANTHER)|GO:0030976(InterPro)|GO:0030976(PANTHER)
Cco07g1724 578 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 392 567 IPR029061 -
Cco07g1724 578 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 20 187 IPR029061 -
Cco07g1724 578 Gene3D - 364 578 - -
Cco07g1724 578 CDD TPP_PYR_POX_like 27 175 - -
Cco07g1724 578 FunFam 2-hydroxyacyl-CoA lyase 208 362 - -
Cco07g1724 578 ProSitePatterns Thiamine pyrophosphate enzymes signature. 446 465 IPR000399 GO:0000287(InterPro)|GO:0030976(InterPro)
Cco07g1724 578 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 413 561 IPR011766 GO:0003824(InterPro)|GO:0030976(InterPro)
Cco07g1724 578 FunFam 2-hydroxyacyl-CoA lyase 13 193 - -
Cco07g1724 578 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 25 133 IPR012001 GO:0030976(InterPro)
Cco07g1724 578 Gene3D - 208 362 - -
Cco07g1724 578 FunFam 2-hydroxyacyl-CoA lyase 1 364 578 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1724 K12261 - - csv:101218890 1088.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g01934 . . . . . . Bma02g00992 . . . . . . . . . . . . . . . . . Cla07g01567 Cam07g1667 Cec07g1761 Cco07g1724 Clacu07g1651 Cmu07g1617 Cre07g1991 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006002 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 3 39