Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1728 ATGAGGAGAGGGAGTTTAAAAACTACTCTACATTTGACAGAGTTTTCTTCTTCCTATCTTCGCTCTCCCCTGGATTTAGTAATTCTCCAAGCAGACGTTGGAAGTCTTCCCTGGTGGCACCCACTTCAGCGGTCGTTTCCTTGCCCTCCAAAGCAAGGCGTTGTGCGATATCCTGCCATGTCAAGGGGTCTCTGGACTGAGTCCCAGCCTCCATCTCCTTCTCCAGTTCTCTCGCACTTTCTCCTTCTCTTTCTCAGCACAACACCTTTCTCCTTCTCTTCATCTTCACTTCGTTTTCGGCTCCCACTTCCATCTTCCATCTCAGGCTCCCACTCCCATCTCCGATTCGCACCTCAGTCAGCCACCGGCACGGCCATCTTCCGTCTCACTCAGGACCCCGAGGAGCTGGCACGAGTTTCGTTGCAGGCTGTTCTCCTTGCCGATAGCTTTACTACTAAGTTTCGCCCCATTACGCTTGAACGCCCCAAGGTATTACTGCCGCTCGTAAATGTCCCGATGATTAATTATACCTTATCTTGGCTCGAATCGGCTGGTGTTGAAGAGGTGTTTGTATTTTGCTGTGCTAACTCGAAGCAAGTAATTGATTATTTGGAGAACTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCACAACTATAGAGTCGCACAACTCCATTAGCGCTGGAGATGCCTTGCGTTTGATCTACGAAAGAAATGTGATACATGGTGATTTTGTACTTATCACTGGAGACACCATAAGCAACATGTCACTTACGCAAGCTCTTCAAGAACACAAAGAGAGAAAGAAGAAAGATAGTAATGCCGTAATGACTATGGTTGTCAAACGGTCAAAGCCTTCTCCTATCACTCACCAATCTCGGCTTGGCACCGACGAACTATTTATGGCAATGGATCACAATACTAAGCAACTCTTGTACTATGAGGATAAGGTTGACCATTCAAAAGGAATTATACATCTGGACAAGTCATTGCTACTGGATAATCCTTCCATATCACTTCATAACGACATGCAGGATTGTTACATAGACATATGCTCCCCAGAAGTACTCAGTTTGTTTACTGACAATTTTGACTACCAACATCTACGTCGTCATTTTGTGAAGGGCTTGCTCTTAGATGATATCATGGGTTACAAGATTTATACACATGAAATTTGCTCAAGCTATGCAGCTAGAATCGATAATTATCGAAGCTATGACACCGTTAGTAAGGACATAATACAAAGGTGGACATATCCACTGGTACCTGATGTTAAATTCTTTGGGAATTCTGCTTATAAACTTGAAAGGCAGGGAATGTATCGAGCATCAGATATACTGCAGGCACGCTCTGCACAGGTTGGTCCGTTTACTGTTATTGGAGATAACAGCAAAATTGGTGGTAACACCAAAATTGCGAATTCAATTATTGGCCAAGGGTGTAATATTGGATCAAATGTTACAATTGAAGGCTCTTATATATGGGACAATGTGACCATTGAAGATGGCTGTAAACTCAGTCATGCTATTGTATGTGATGGAGTTGTCATAAAGTCAGGAGCAGAACTGGAACCTGGTGTAATTTTGTCTTTCAAGGTTGTTGTGGGGGATCAATTTACCGTTCCATCATATTCAAAGGTATCTTTGTTTCAGCAGCCAACCAATCAAGATAGTGATGAGGAGCTGGAATATGCAGATAATAGCAGTGGCATTGTAGAATTTGCAGATACAACAGACAAGTCAAATAGTGCACTGATGTCCAAATCGCTGGAAATGCAAGGCTGGCCTGCATCTGAGCTAGGCAAGGGAGGTCTAGGACATGTTTGGTCAATTTGTGAAGGAAGTGTCGAAGAAGAATGGAGGCACTCAGTTGCACCCATTCCTGCCGATAAACTTGAGAAGGTTCTGCATAAAGCAACAGATGATGAGCTGGAGTTAACTCAAGATGCTAATATTTTACCACCTTCAGGGGAGTTGAAGTCCGACTCATACGTCTCAGATGGTGATGATAACGAAAGCTCTAGAGATGACTCCTTCCACTTCGAGAAAGAGGTTGAAGCAACATTTCTGAGGGCTGTGCATGAAAATATTGAAGTAGCCAATGTAATTTTGGAAGTGAATTCATTGCGGTTGTCATATAATAAGGTAGCTTCAGATTGTGCAGGAGCAATATTTTATTCTCTGATGAACTTTGCCTTAGATGCTCCACATGGTTCATCTAGTGAACTACTGCAAAATACTACAAATATAATTACGAAATGGAAAAAACTTTTGAAGTACTACCTAACCGACTTGGATGAAGAGATTGAAGTGATATTAAAATTTGAAGAGATATGCCTGGAATCTGCCAAGGAATTCACTCCACATTTTACTAAGATTTTGTGGCATCTATATGACCAAGAAATCATTCAAGAAGAGGCTATTCTGAAGTGGGATTCTGAGAAAAAGGAAGCGGATGATTCAGATAAGCTTTTCGTGAAGCAGGCCGAAAAATTCATTGAATGGTTAAAAGTTGCACCAGAGGAAGAGGAAGAGGAAGAAGAGGATGAATAG 2553 42.46 MRRGSLKTTLHLTEFSSSYLRSPLDLVILQADVGSLPWWHPLQRSFPCPPKQGVVRYPAMSRGLWTESQPPSPSPVLSHFLLLFLSTTPFSFSSSSLRFRLPLPSSISGSHSHLRFAPQSATGTAIFRLTQDPEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSISAGDALRLIYERNVIHGDFVLITGDTISNMSLTQALQEHKERKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAMDHNTKQLLYYEDKVDHSKGIIHLDKSLLLDNPSISLHNDMQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASDILQARSAQVGPFTVIGDNSKIGGNTKIANSIIGQGCNIGSNVTIEGSYIWDNVTIEDGCKLSHAIVCDGVVIKSGAELEPGVILSFKVVVGDQFTVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVEFADTTDKSNSALMSKSLEMQGWPASELGKGGLGHVWSICEGSVEEEWRHSVAPIPADKLEKVLHKATDDELELTQDANILPPSGELKSDSYVSDGDDNESSRDDSFHFEKEVEATFLRAVHENIEVANVILEVNSLRLSYNKVASDCAGAIFYSLMNFALDAPHGSSSELLQNTTNIITKWKKLLKYYLTDLDEEIEVILKFEEICLESAKEFTPHFTKILWHLYDQEIIQEEAILKWDSEKKEADDSDKLFVKQAEKFIEWLKVAPEEEEEEEEDE 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31301671 31317845 - CcPI632755_07g017280.1 Cco07g1728 184381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1728 850 MobiDBLite consensus disorder prediction 663 677 - -
Cco07g1728 850 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 131 421 IPR029044 -
Cco07g1728 850 MobiDBLite consensus disorder prediction 646 677 - -
Cco07g1728 850 SUPERFAMILY Nucleotide-diphospho-sugar transferases 140 487 IPR029044 -
Cco07g1728 850 SUPERFAMILY ARM repeat 681 837 IPR016024 -
Cco07g1728 850 SMART 542_3 755 842 IPR003307 GO:0005515(InterPro)
Cco07g1728 850 SUPERFAMILY Trimeric LpxA-like enzymes 385 547 IPR011004 -
Cco07g1728 850 CDD LbH_eIF2B_epsilon 459 537 - -
Cco07g1728 850 Pfam eIF4-gamma/eIF5/eIF2-epsilon 767 846 IPR003307 GO:0005515(InterPro)
Cco07g1728 850 Pfam Nucleotidyl transferase 143 286 IPR005835 GO:0009058(InterPro)
Cco07g1728 850 Pfam Bacterial transferase hexapeptide (six repeats) 458 491 IPR001451 -
Cco07g1728 850 CDD eIF-2B_epsilon_N 141 357 IPR035543 -
Cco07g1728 850 CDD W2_eIF2B_epsilon 676 837 IPR044123 GO:0005085(InterPro)|GO:0031369(InterPro)
Cco07g1728 850 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 134 849 IPR051956 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0031369(PANTHER)
Cco07g1728 850 FunFam Translation initiation factor eIF-2B subunit epsilon 130 421 - -
Cco07g1728 850 FunFam Translation initiation factor eIF-2B epsilon subunit 671 849 - -
Cco07g1728 850 Gene3D Hexapeptide repeat proteins 438 546 - -
Cco07g1728 850 ProSiteProfiles W2 domain profile. 675 846 IPR003307 GO:0005515(InterPro)
Cco07g1728 850 Gene3D - 669 849 - -
Cco07g1728 850 FunFam Trimeric LpxA-like enzyme 434 567 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1728 Cco-Chr7:31301671 Cco10g0749 Cco-Chr10:11604692 1.40E-19 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1728 K03240 - csv:101217025 1335.47