Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1729 ATGCCTGCAGACAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGCAGGAGGTTCATCGAGCTCATCGTTGGCGGCGGCCACGCCATGGCTTAGGCTGAAGGATCCGAGGATTGTACGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCAGTTTCAACCGCAATTCAGCTCTATGATCTTCAAGACCGGCTTGGGCTTAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCGGCAAGCCTCGGCCTTCACTATCAATCTATGCTACCACCAACCGTGCACCACCCGCATAGATCGGAGTTCAAAATCAACTGCATCGACAAGGCCGAGGTCGAGGACGAGACCGAATTGGAAAAGCAACAGAAATCAGATAATAATTCTACTAATCCCTCTCATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCAACATCATCAACAACAACAAATAATCTTCCATTTCTTACATCTCAACAACCTCAGGATAATACTAATCTTCATAACTTCAATCATCTCAATTTGTGTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATACACCTCCTAATTTCCACCCCGCTGTTAGGCCTTTTCATTTTAGTATGGCTACCAAATTCCTCTCTCAAGACAAGAATAACAATAATAATGCAGATAATCTTCCAAATAAGGATCATGGCTTTGCTTCTGATGAATGA 930 44.3 MPADKHDERHNMIKNSKEENSPPPKLAAAGGSSSSSLAAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHHPHRSEFKINCIDKAEVEDETELEKQQKSDNNSTNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSTSSTTTNNLPFLTSQQPQDNTNLHNFNHLNLCLPSPLSLEFNHLHQNFFINNNSLNNTPPNFHPAVRPFHFSMATKFLSQDKNNNNNADNLPNKDHGFASDE 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31325540 31327041 - CcPI632755_07g017290.1 Cco07g1729 184382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1729 309 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Cco07g1729 309 Pfam TCP family transcription factor 60 171 IPR017887 -
Cco07g1729 309 MobiDBLite consensus disorder prediction 1 16 - -
Cco07g1729 309 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 275 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Cco07g1729 309 MobiDBLite consensus disorder prediction 287 309 - -
Cco07g1729 309 MobiDBLite consensus disorder prediction 1 34 - -
Cco07g1729 309 MobiDBLite consensus disorder prediction 169 185 - -
Cco07g1729 309 MobiDBLite consensus disorder prediction 159 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1729 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1761 Cco-Chr1:30367191 Cco07g1729 Cco-Chr7:31325540 7.60E-31 dispersed
Cco03g0779 Cco-Chr3:8198509 Cco07g1729 Cco-Chr7:31325540 4.30E-24 dispersed
Cco04g2255 Cco-Chr4:36112428 Cco07g1729 Cco-Chr7:31325540 1.30E-24 dispersed
Cco06g1755 Cco-Chr6:28031362 Cco07g1729 Cco-Chr7:31325540 1.30E-33 dispersed
Cco07g1729 Cco-Chr7:31325540 Cco11g1818 Cco-Chr11:30859135 3.10E-20 dispersed
Cco11g0552 Cco-Chr11:5852303 Cco07g1729 Cco-Chr7:31325540 1.80E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g0861 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.2e-68 255.0
Cco02g1531 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cco06g0018 . 59 343 TCP Transcription Factor Family AT2G45680 53.8 2.5e-66 249.6
Cco05g2708 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 8.5e-41 165.2
Cco01g1830 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cco11g1390 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cco11g1390 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cco05g1567 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cco02g1531 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.6e-64 241.5
Cco01g0861 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.6e-63 237.3
Cco11g1390 . 147 388 TCP Transcription Factor Family AT1G35560 50.4 1.7e-43 173.7
Cco07g1729 . 43 183 TCP Transcription Factor Family AT3G02150 58.8 5.8e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59710 PF03634 TCP 9.00E-28 No_clan Cco TF