Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1729 ATGCCTGCAGACAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGCAGGAGGTTCATCGAGCTCATCGTTGGCGGCGGCCACGCCATGGCTTAGGCTGAAGGATCCGAGGATTGTACGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCAGTTTCAACCGCAATTCAGCTCTATGATCTTCAAGACCGGCTTGGGCTTAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCGGCAAGCCTCGGCCTTCACTATCAATCTATGCTACCACCAACCGTGCACCACCCGCATAGATCGGAGTTCAAAATCAACTGCATCGACAAGGCCGAGGTCGAGGACGAGACCGAATTGGAAAAGCAACAGAAATCAGATAATAATTCTACTAATCCCTCTCATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCAACATCATCAACAACAACAAATAATCTTCCATTTCTTACATCTCAACAACCTCAGGATAATACTAATCTTCATAACTTCAATCATCTCAATTTGTGTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATACACCTCCTAATTTCCACCCCGCTGTTAGGCCTTTTCATTTTAGTATGGCTACCAAATTCCTCTCTCAAGACAAGAATAACAATAATAATGCAGATAATCTTCCAAATAAGGATCATGGCTTTGCTTCTGATGAATGA 930 44.3 MPADKHDERHNMIKNSKEENSPPPKLAAAGGSSSSSLAAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHHPHRSEFKINCIDKAEVEDETELEKQQKSDNNSTNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSTSSTTTNNLPFLTSQQPQDNTNLHNFNHLNLCLPSPLSLEFNHLHQNFFINNNSLNNTPPNFHPAVRPFHFSMATKFLSQDKNNNNNADNLPNKDHGFASDE 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31325540 31327041 - CcPI632755_07g017290.1 Cco07g1729 184382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1729 309 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Cco07g1729 309 Pfam TCP family transcription factor 60 171 IPR017887 -
Cco07g1729 309 MobiDBLite consensus disorder prediction 1 16 - -
Cco07g1729 309 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 275 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Cco07g1729 309 MobiDBLite consensus disorder prediction 287 309 - -
Cco07g1729 309 MobiDBLite consensus disorder prediction 1 34 - -
Cco07g1729 309 MobiDBLite consensus disorder prediction 169 185 - -
Cco07g1729 309 MobiDBLite consensus disorder prediction 159 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1761 Cco-Chr1:30367191 Cco07g1729 Cco-Chr7:31325540 7.60E-31 dispersed
Cco03g0779 Cco-Chr3:8198509 Cco07g1729 Cco-Chr7:31325540 4.30E-24 dispersed
Cco04g2255 Cco-Chr4:36112428 Cco07g1729 Cco-Chr7:31325540 1.30E-24 dispersed
Cco06g1755 Cco-Chr6:28031362 Cco07g1729 Cco-Chr7:31325540 1.30E-33 dispersed
Cco07g1729 Cco-Chr7:31325540 Cco11g1818 Cco-Chr11:30859135 3.10E-20 dispersed
Cco11g0552 Cco-Chr11:5852303 Cco07g1729 Cco-Chr7:31325540 1.80E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59710 PF03634 TCP 9.00E-28 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1729 - - - 0.0