Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1737 ATGAGATGGGCTAGCCGGCTTGTTGCGCTCTTCAAACAAAGTCCAGAACCTTCTTCTTCTGATCTGTCAGATCGGGCTTTTGGTTTCAACCCCACTTATCGTAGTCGATTCAATCAGATCTACTTCACCCTTCTCACTGCTGATTTTTGTGCTACAATTTCTGGTGGGATGTTGTTTCCAAGTGGTGCAACTGCAATGTGGCTAGGTTGGGCTGGGATGAAGAAGGCCTTTGATCAAACTGTTAGAGACTTGAAAAGAGAGGTCAATAAGACCGTGCTCAAAATCCCTAAAATTGAGCAGAAGGTTTTGGATGCCACTAGCAATGAGCCTTGGGGTCCTCATGGATCCCTTCTTGCAGATATAGCACAGGCAACTAGAAATTATCATGAATATCAAATGATCATGGGAATACTTTGGAAGAGGATTAATGATACCGGAAAGAATTGGAGGCATGTCTACAAGGGTTTGACCGTTTTGGAGTACTTGGTGGGTCATGGGTCAGAGCGTGTCATAGATGACATCAGAGAACATGCATATCAGATATCGACCTTATCTGATTTTCAATACATCGACTCCAATGGGAGGGACCAAGGTAACAATGTTAGAAAGAAATCTCAAAATCTTGTTGCCCTTGTAAATGATAAAGAAAGGATCATTGAGGTCAGACAAAAGGCTGCTGCTAACAGGGACAAGTTTCGCAGCCCATCATCTATGGGCAGTATGTATAGACCAAGTTCAGGAGGATATGATGACCGCTATGAAGGACGATATGGAAGCCGTGATGGAGACAGAAATGTTGATTCTTATGGGAGGGAAAGAGATTATGGTTTTAGAGATGATCGTTCTGGCAGAAATGAGGATTCATATGGTCGTGATTATGAAGAGCGCTATAACAGAGATGGTTTTAAGGATGATGATTATCGAGGAAGAAGCCGAAGCATTGATGACTATCAGTATGGTTCAAGGAGCAGGAGCTCTGACAGAGATGGAGAACGTACATTTGATGATGATGGTCAAGCTTCTTCTCGCAACAATGGTGCCAGAGCTGACGAGCAAGCTCAGGATGGAAGGCAGCTTGAACGTAAATTTTCAGAACAGAATATTGGTGCTCTGCCAAGTTATGAAGAAGCTGTAAATGAAACTGGAAGCACTGGTCATAGTCAAAGAGATGTAGAAGCTCCAGCAACTACTGCTCCAAGAACTTTTCCTCCACCCACACCCAGTACTCCAAGCCAGCTAACTACTCATGCAACCACTGCATCCCCGCCTACCCAGGGACTTGATGGTTCTGATGAATTTGACCCCCGTGGTTCAGTTCCAGTTCCAGCTGCTCCAAATGCCTCGAGTAGTTTGGAGACAAATTTATTTGACTCCTTGGCCTTAGTGCCTGTTGGGCCAGTAACATCCAGTGCAGACTCTGAGAGTCATGTTCAGACAAACTCTGCTGTGGGATCCTATACTCAAACTCAGACTTTTGAAGACCCATTTGGTGACTCCCCTTTTAAAGCCATTTCTTCCTCTGGCGTCCAAGATCAAGCACATTTTCACCGTGGGGAATCATTTTCTGCAGCAACTTACTCCACACCAGACATCCCTGTTCAACCTCAACCGAATTTGCATCACCCTCGTGAAGAAACTCTGCAACATCTTAATATTGGTGTACTGGCTGATCTCCTTCCTCCTGAAACTTTACCAGCTGCTGTTTCACAGCCCACATTTACAGTATCAAACCAACCAGCACAGCCAAATTTTCAAGCTGCATCTGGCTTGCCTGCACAGCCAAATTCTAACTTGGGGAATTATCAGCAGGATGGAAATACTGGTCCTGTGAATTTTCAAAATCAAACAGAACCAGGGAGAGAGTTCGGCAATGGGATGTTCGTGGCACAGGGAGGAGTACCAGCTCATGTCAATTCATATATGGCTCCTCCAAGTGCTGGACCTAATACCCAGCCGAACAATTTTGGAACAACTCATAATGGTTCTGCAGCTCCCACGAGTTCTCATGTCACGCTTCAAACTACAAGACCGCCTGCTCAGCTTGCTAGTGGAAACTTCAATCCGCCACACGGTTCAGTAGCTTCTCAAGTATCTTACCAAGCCTCAAATTTTCCTGTTGTAAAATCCAACGTTGAGGTTATGGGTAGTTTTAGTCCTCAGGCAGGAAACTACACAATGACTTCCCAGCAAATTCCTCCAGCCGGATCACTTTCAACTGCATCTCAAGCTTCGAAGAAGAAGTTTGAAACCAAGTCCACAGTATGGTCTGACACATTAAGCAGAGGGCTAGTCAATTTAAACATATCTGGACCTAAAGCAAACCCAATGGCGGACATCGGTGTTGATTTTGAAGCCCTCAATAGGAAGGAGAAGAGGATGGAGAAGCCTAGTACAGCTCCAGTGATATCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCTGGGATAGGCCGAGCCGGTGCTAGTGCACTAAGGCCACCTCCAAATGCAATGTCAGGTTCCGGTTCGGGCATGGGAATGGGCATGAACCCCAATCTTGGCATGGGCATGGGCATGAGAGGCTATGGAGGTATGAATCAACCCATGGGTGGCATGGGGATGAATATGGGCATGGGGCAACAAGGAATCCCAATGCAGCAACCTCGAGCGAACATGCCCGGTGTATACAACCCGATGATGGGTGCTGGTGGTTATGCTCCTCAACAGCCACCATACGGCAGTTACCGATGA 2733 45.99 MRWASRLVALFKQSPEPSSSDLSDRAFGFNPTYRSRFNQIYFTLLTADFCATISGGMLFPSGATAMWLGWAGMKKAFDQTVRDLKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAQATRNYHEYQMIMGILWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHAYQISTLSDFQYIDSNGRDQGNNVRKKSQNLVALVNDKERIIEVRQKAAANRDKFRSPSSMGSMYRPSSGGYDDRYEGRYGSRDGDRNVDSYGRERDYGFRDDRSGRNEDSYGRDYEERYNRDGFKDDDYRGRSRSIDDYQYGSRSRSSDRDGERTFDDDGQASSRNNGARADEQAQDGRQLERKFSEQNIGALPSYEEAVNETGSTGHSQRDVEAPATTAPRTFPPPTPSTPSQLTTHATTASPPTQGLDGSDEFDPRGSVPVPAAPNASSSLETNLFDSLALVPVGPVTSSADSESHVQTNSAVGSYTQTQTFEDPFGDSPFKAISSSGVQDQAHFHRGESFSAATYSTPDIPVQPQPNLHHPREETLQHLNIGVLADLLPPETLPAAVSQPTFTVSNQPAQPNFQAASGLPAQPNSNLGNYQQDGNTGPVNFQNQTEPGREFGNGMFVAQGGVPAHVNSYMAPPSAGPNTQPNNFGTTHNGSAAPTSSHVTLQTTRPPAQLASGNFNPPHGSVASQVSYQASNFPVVKSNVEVMGSFSPQAGNYTMTSQQIPPAGSLSTASQASKKKFETKSTVWSDTLSRGLVNLNISGPKANPMADIGVDFEALNRKEKRMEKPSTAPVISTINMGKAMGSGSGIGRAGASALRPPPNAMSGSGSGMGMGMNPNLGMGMGMRGYGGMNQPMGGMGMNMGMGQQGIPMQQPRANMPGVYNPMMGAGGYAPQQPPYGSYR 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31400042 31407992 - CcPI632755_07g017370.1 Cco07g1737 184390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1737 910 PANTHER EPSIN/ENT-RELATED 73 854 - GO:0005543(PANTHER)|GO:0005768(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0030125(PANTHER)|GO:0030276(PANTHER)
Cco07g1737 910 MobiDBLite consensus disorder prediction 411 426 - -
Cco07g1737 910 MobiDBLite consensus disorder prediction 573 623 - -
Cco07g1737 910 MobiDBLite consensus disorder prediction 641 669 - -
Cco07g1737 910 MobiDBLite consensus disorder prediction 377 391 - -
Cco07g1737 910 MobiDBLite consensus disorder prediction 573 620 - -
Cco07g1737 910 CDD ENTH 98 214 - -
Cco07g1737 910 MobiDBLite consensus disorder prediction 643 669 - -
Cco07g1737 910 SMART enth_2 96 222 IPR013809 -
Cco07g1737 910 Pfam ENTH domain 97 218 IPR013809 -
Cco07g1737 910 MobiDBLite consensus disorder prediction 224 448 - -
Cco07g1737 910 MobiDBLite consensus disorder prediction 490 510 - -
Cco07g1737 910 SUPERFAMILY ENTH/VHS domain 95 234 IPR008942 -
Cco07g1737 910 FunFam Clathrin interactor 1 88 235 - -
Cco07g1737 910 Gene3D - 95 234 IPR008942 -
Cco07g1737 910 MobiDBLite consensus disorder prediction 724 743 - -
Cco07g1737 910 ProSiteProfiles ENTH domain profile. 90 222 IPR013809 -
Cco07g1737 910 MobiDBLite consensus disorder prediction 249 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1737 K12471 - - csv:101208671 1368.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1737 Cco-Chr7:31400042 Cco08g0548 Cco-Chr8:14165786 3.70E-130 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1118 . . . . . . . . . . . Cma14g01498 . Car14g01330 . . Cpe03g01258 Bhi01g02630 . . . Hepe05g1275 . . . . . . . . . . . . . . . . Cme07g01854 . . . . . . . . . . Cmo14g01533 . . . . . . . . . . . . . Cla07g01582 Cam07g1679 Cec07g1774 Cco07g1737 Clacu07g1663 Cmu07g1629 Cre07g2003 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53