Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1749 ATGGCCTCCGCCCACGGCGGCGCCGGTCTCACTCGGTACGGTTCCGCGCCTGGATCTCTCCTGACCACGGCGGTCGATTCCGTGATTGGAAGTCGGCAACCGGACTCCGCCGCCACGCTCCGCGGGCCGCCGTCGTTCGGCGGCCACTACTTCTCCTCCGCCGATTCCTCCGTCGTGGAGTCGTCAAGGAAGGTAGTTCAGTCGTCGTCTACTTCCAACGATCTGAAATCATCGTCGTCCACCGCCGCCGCCTTGCATAGGTCATACGGAATCAACGATTTGGCGTTAGGGGATTTCTCGACGGGTAGAAATTTCAATAGCAATGGTGGTCAATCCTCTTCCTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCGGCCATCTCTCCGTCGCCGAACCCAACGGAGGGTTTTCATTGACAATGGGAGGTGGTGGAAATGGAGTAGGAAGACTAAAGTCTCAAATGAGCTTCAGTGGGCAAGATAATTCACTTTCCCAAATCTCTGAAATGAGTGAAAGTTTTGTGGAGGCAGCCAATTCCTCAAGCAATGGCCTTCAAAGCAACACCAATTCCACCCATTCTTTTGGCCCCTCTGCCTTTGCTATGGACTCTTCATGGGACACCTCCAATAATTCCATTGTCTTTGGTGCCCCTCATGCTAAAAGATCCAAGCACCATTCCGATGCCGACTTCTTCACGGACCTCGAGTCTCAATTTAGCCTGCCACAAACAACTTTAGAAATGGCAGCTGTGGAGAGGTTGCTTCAAATTCCTGAAGATGCTGTTCCTTGTAAGATTCGAGCCAAGCGTGGCTGTGCTACTCACCCTCGGAGTATTGCCGAACGGGAGAGAAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAGCTTGTTCCCAACATGGATAAGCAAACAAGCTATTCAGACATGTTGGACTTGGCAGTGCAGCATATCAAAGGTCTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTGAGAATTGCACCTGTGGAAGCAAAGAATGCTTATAA 1047 50.81 MASAHGGAGLTRYGSAPGSLLTTAVDSVIGSRQPDSAATLRGPPSFGGHYFSSADSSVVESSRKVVQSSSTSNDLKSSSSTAAALHRSYGINDLALGDFSTGRNFNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEPNGGFSLTMGGGGNGVGRLKSQMSFSGQDNSLSQISEMSESFVEAANSSSNGLQSNTNSTHSFGPSAFAMDSSWDTSNNSIVFGAPHAKRSKHHSDADFFTDLESQFSLPQTTLEMAAVERLLQIPEDAVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKECL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31592371 31599651 - CcPI632755_07g017490.1 Cco07g1749 184402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1749 348 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 76 335 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco07g1749 348 SMART finulus 282 332 IPR011598 GO:0046983(InterPro)
Cco07g1749 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 276 326 IPR011598 GO:0046983(InterPro)
Cco07g1749 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 340 IPR036638 GO:0046983(InterPro)
Cco07g1749 348 CDD bHLH_AtbHLH_like 281 333 IPR045239 -
Cco07g1749 348 Pfam Helix-loop-helix DNA-binding domain 282 327 IPR011598 GO:0046983(InterPro)
Cco07g1749 348 Gene3D - 277 345 IPR036638 GO:0046983(InterPro)
Cco07g1749 348 Coils Coil 316 343 - -
Cco07g1749 348 FunFam Transcription factor bHLH130 family 277 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1749 Cco-Chr7:31592371 Cco10g1712 Cco-Chr10:30666634 1.30E-35 dispersed
Cco07g1749 Cco-Chr7:31592371 Cco02g1832 Cco-Chr2:31226410 2.70E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59712 PF00010 HLH 9.10E-09 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1749 - - - 0.0