Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1756 ATGGCTGATTCCCGAGCTCTTCCTCTTCGTTGCGGAGCAGGTATCGTCAAAAGTATCCGCTTAGAAAACTTCATGTGTCACAGCAACTTGTATATTGAATTTGGCGAGTGGCTCAATTTCATTACTGGGCAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAAAGGAACCCAAAGGGCTTCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCAATGTTGTATTGCAAAATACTGGGGAGGATGCTTTCAAGCATGGAATATATGGTGATGTTATAATCATAGAAAGAAGGATATCCGAAGCCACCAGTGCTATTGTTTTGAAGGATTCTCATGGGAAAAAAGTTGCCAGTCGGAGGGATGAACTACGAGAGCTAGTAGAACATTTTAATATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAACGACAAAGACAAATTTAAGTTCTTCTTCAAGGCAACTCTTCTTCAGCAAGTGGACGATTTACTGAAAAACATTTTTGATCAATTGAGATCAGCAAATGCGCTTGTTGATGACTTGGAGTCTACCATACGACCTGTAGAGAAGGAACTAAATGAGCTGCGAGGAAAAATTAAAAACATGGAGCATGTAGAAGAAATCTCTCAACAAGTCCAGCAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCATCAACTGGGTCTGGCAGGAAAATTAAGAGAACGCTTTATTGAGAAAAAGACTCAAATTGCAAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGGAACTCTTTCCTTGGCAACAAGAGAGAAGCTCGGACTTGAAGAGGAGCATGGCCGTAAAATAAACTACATCCAAAAGATGGCAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATAAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATTGGAGACTGAAGATGCTAAGTCAACAGTAATGAGGTTGAAAGAGGAGGAAAATGCCTTAATGGAAAGTCTATACAGTGGGAGAAATGAAATAAAAAAGATTGCTGAAGAGATTGAAAGTTATGAGAAAAAGCATTATGAATTTTCTCACTCAATTCGAGAGCTAAGGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGCAATTGAGAGACAACATCAAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAAGTGCCATTGGAAGGTTGCTCAATGCTTTCATTGTGACTGATCACCAAGATTCTCTTCTTTTGAGAAGATGTGCAAATGAAGCTAATTATAGGCAACTCCCAATTATCATCTATGACTTTTCAAGACCGGTGTTAAATATTCCAGATCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTCATTCATTCTGAAAACCACACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGCTGTGGGTAAATCAGTCGCATTTGACCAACGTATATCAAATCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCTCGAGGTTCTGTCCAGACAATTCTTCCCCCAGTTAGAAGACCCAGAAGTGGCAGACTTTGTAGTTCCTTTGAAGACCAAATTAAAAGTCTTGAAAGAGATGCATTTAATGTAAAGCAAGAAGCTGAACAATGTAGGAAGAGGAAGAGAGTTTCAGAAGAACAACTCCGGGATCTTGAAGACAACCTAAGCAATGCGAAGAGGAAGTGTCGGAGTGCAGAACGGTTTTTAATGGCCAAAAATTTGGAGCTGCAAGATTTACGGAAGTCACAAGTTGCTGAGACTAGTTCATTGCCTTCATCAAATGTGGACGAGCTTCATCAAGAAATTTCTAAAATCGAAGAGGAGATACAAGAGAATAATTTGCTTTTGGAAAAGTTTAAAGTTAGGATGAAAGAAGCGGAAGCCAGGGCAAAAGATCTTAAAGTATCATTTGAAAATCTCTGTGAGTCAGCGAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAGAGATATGTTGCAGATTGAACGAGAGCTGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGTATTATGACTAACAAGGTACTTTTTGATATTAAAGAGGCAGAGAGACAATATCAGGAGCTTGAGCGCTATCGTAAGGAGAGCTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTGGGTGATTGGGATGGGAGCACACCTGAACAACTGAGTGCACAATTAACAAGGCTAAATCAGAGACTGAATAATGAGACTCGACGATGTTCTGAATCTCTGGAAGACTTGAGGATGATGTATGAGAAAAAGGAGCGTACAATCATAAGAAAACAACAGACTTATAAAAGTTTTAGGGAGAAGTTGGACGCTTGCCAGAAAGCTCTTGAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAGGGGATCAGCGGACATATAAAAGTTAATTACGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGTGGAGAACGGTCATTTTCAACTCTATGCTTTGCTTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGCCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATCACACCTCATGACATCGGCATAGTAAAACAAGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3159 40.42 MADSRALPLRCGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGCSHAVINVVLQNTGEDAFKHGIYGDVIIIERRISEATSAIVLKDSHGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDQLRSANALVDDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLAGKLRERFIEKKTQIASMMERTSEVRRMKDELQGTLSLATREKLGLEEEHGRKINYIQKMAKRVRLLEQQVQDIHEQHIRNTQAEESEIEEKLKELELETEDAKSTVMRLKEEENALMESLYSGRNEIKKIAEEIESYEKKHYEFSHSIRELRQHQTNKVTAFGGDRVIQLLRAIERQHQRFKKPPIGPIGSHLNLVNGDMWAPAVESAIGRLLNAFIVTDHQDSLLLRRCANEANYRQLPIIIYDFSRPVLNIPDHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYAVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFEDQIKSLERDAFNVKQEAEQCRKRKRVSEEQLRDLEDNLSNAKRKCRSAERFLMAKNLELQDLRKSQVAETSSLPSSNVDELHQEISKIEEEIQENNLLLEKFKVRMKEAEARAKDLKVSFENLCESAKGEIDAFEEAERDMLQIERELHSAEKEKDHYEGIMTNKVLFDIKEAERQYQELERYRKESYSKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRCSESLEDLRMMYEKKERTIIRKQQTYKSFREKLDACQKALELRWNKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGIVKQGERIKKQQMAAPRS 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31700541 31713491 - CcPI632755_07g017560.1 Cco07g1756 184409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1756 1052 Coils Coil 802 822 - -
Cco07g1756 1052 Coils Coil 362 396 - -
Cco07g1756 1052 SUPERFAMILY Smc hinge domain 423 611 IPR036277 GO:0005515(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0051276(InterPro)
Cco07g1756 1052 Coils Coil 189 223 - -
Cco07g1756 1052 Gene3D - 737 1047 IPR027417 -
Cco07g1756 1052 Coils Coil 312 332 - -
Cco07g1756 1052 Coils Coil 340 360 - -
Cco07g1756 1052 Pfam RecF/RecN/SMC N terminal domain 16 1042 IPR003395 -
Cco07g1756 1052 Gene3D - 15 323 IPR027417 -
Cco07g1756 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 1034 IPR027417 -
Cco07g1756 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 283 IPR027417 -
Cco07g1756 1052 Coils Coil 628 683 - -
Cco07g1756 1052 Coils Coil 710 793 - -
Cco07g1756 1052 Coils Coil 850 888 - -
Cco07g1756 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 12 1050 - GO:0000724(PANTHER)|GO:0003684(PANTHER)|GO:0003697(PANTHER)|GO:0005634(PANTHER)|GO:0030915(PANTHER)|GO:0035861(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1756 Cco-Chr7:31700541 Cco09g0425 Cco-Chr9:3789407 9.80E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1756 K22804 - csv:101208493 1931.38