Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1769 ATGACCCAGTTGCTGAATCTAGCTCTTGGACTGGTTTTAGTTGCAGTTTTGGTGATTTTCCTTCTCATCTTCTTGAACAGAAGGGGAAAGGGGAAGGATAATGATGAATACAATGACATAGAGAGAAAACAGGAGAGGGAGAAAGCGGAGGAAGAGAAAGAAGAATTGGTGAGTTTTCAAGGTGGACAGGACCTTACCATTGTGGATATTTTGGAAGCTCCTGGGGAAGTAATTGGGAAAGCCAACCATGGAACTTTGTATAAGGCTTATTTGCAAGGAAGCAACACAGTAAGGCTGCTAAGGTTTCTGAGGCCAGTTTGCACTGCTGGCCTTGAAGACTTTGTCAGTGAAATTGAGTTTTTAGGTTCCATAAGACACCCAAATTTGGTGCCTCTCTTGGGATTCTACTCAGGTCCAAGAGCAGAGAAGCTTCTCATTCATCCATTTTACAGGCGAGGAAATCTAGCTCAGTTCATTAGAGATGGGAATGGCGACTCACACCGATGGGGAGTTATAAACAAGATCTCGATTGGTATTGCGAAAGGATTGGATCATCTTCACACTGGCCTGCAAAAGCCAACAATCCATGGGAATCTTCAATCGAAAAATGTTCTTTTGGATAGGTATTATGAACCGTATGTCTCCGATTTCGGCCTACATCTACTGCTGAATTCCCCATCTGCCCAAGAGGTAGTTGAAGCTTCAGCAGCCAATGGCTACAAAGCTCCTGAGCTGATCAAGATGAAGGATGCAACTGAGGAGACTGACATCTATAGTTATGGGGTGATATTACTCGAGTTACTTTCGGGGAAGGAACCGATCAACGAAAAGCCAAATCCTGATGAGGATTTTTACTTGCCTAACTTTATGAGAAATGCTGTTCTTGGACATAGAATTGCAGATTTGTTCCATCCAGAAATACTTCTGTATAGCAGCATTGATGGAAATCATGTTACTGAAGAAAAGATTCTCAAATTCTTTCAGCTTGCTATGGCTTGTTGTTCTCCTTCTCCTGCTCTTAGACCTAGTATGAAGCAAGTGCTACGGAAGCTCAATGAAATCGGAACGTAG 1071 42.76 MTQLLNLALGLVLVAVLVIFLLIFLNRRGKGKDNDEYNDIERKQEREKAEEEKEELVSFQGGQDLTIVDILEAPGEVIGKANHGTLYKAYLQGSNTVRLLRFLRPVCTAGLEDFVSEIEFLGSIRHPNLVPLLGFYSGPRAEKLLIHPFYRRGNLAQFIRDGNGDSHRWGVINKISIGIAKGLDHLHTGLQKPTIHGNLQSKNVLLDRYYEPYVSDFGLHLLLNSPSAQEVVEASAANGYKAPELIKMKDATEETDIYSYGVILLELLSGKEPINEKPNPDEDFYLPNFMRNAVLGHRIADLFHPEILLYSSIDGNHVTEEKILKFFQLAMACCSPSPALRPSMKQVLRKLNEIGT 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31810622 31811893 - CcPI632755_07g017690.1 Cco07g1769 184422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1769 356 Coils Coil 34 54 - -
Cco07g1769 356 SUPERFAMILY Protein kinase-like (PK-like) 75 351 IPR011009 -
Cco07g1769 356 Gene3D Phosphorylase Kinase; domain 1 38 149 - -
Cco07g1769 356 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 9 355 IPR052451 -
Cco07g1769 356 Gene3D Transferase(Phosphotransferase) domain 1 151 356 - -
Cco07g1769 356 ProSiteProfiles Protein kinase domain profile. 72 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1769 356 Pfam Protein tyrosine and serine/threonine kinase 76 351 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1769 Cco-Chr7:31810622 Cco09g0907 Cco-Chr9:8522635 6.60E-59 dispersed
Cco01g0486 Cco-Chr1:4772241 Cco07g1769 Cco-Chr7:31810622 4.50E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87006 PF07714 PK_Tyr_Ser-Thr 9.10E-31 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1769 - - - 0.0