Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco07g1779 | ATGTTCCAAGGGTTTGTTTTCGGCATTAATGACGTGTACGGCCACGAATTCTCCGCCATGTCTCTGCCGGAATTCACTAACAGCCAGTTAACGGAACAAATCGACGACACGGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACTCGTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACTGCTGTCGCCTGCCCGGCTTTCCGGTCGGGCAGCTGCCCCAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTTCACCCGGCCCGTTACCGGACCCGGGCTTGTAATGCGGGCCGGTTTTGCCAACGGAAAGTTTGTTTTTTCGCTCACTCGCCGGAGGAGCTCCGGCCAGAGACCAAACAGAAATTTAATCTTAATGCTGACCGGCTGCGTGGGGCGGTCTCCACCGTTGAATGTCTGCCGGAGGAAAAAATCGACGGGGTTTCGGCAATTCCGGTGGGGGAGAACGGCGGCGGACGGGGAAATGAACGGAGTTTTGGGTTGGAGGTGTCGGAGTTGGACTCGCCGCATATTGACTGGATATCGGAATTGTTGCAGTAA | 651 | 55.91 | MFQGFVFGINDVYGHEFSAMSLPEFTNSQLTEQIDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNLNADRLRGAVSTVECLPEEKIDGVSAIPVGENGGGRGNERSFGLEVSELDSPHIDWISELLQ | 216 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 31936566 | 31937216 | - | CcPI632755_07g017790.1 | Cco07g1779 | 184432 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco07g1779 | 216 | ProSiteProfiles | Zinc finger C3H1-type profile. | 84 | 111 | IPR000571 | GO:0046872(InterPro) | |
| Cco07g1779 | 216 | PANTHER | UNKEMPT FAMILY MEMBER | 36 | 148 | IPR045234 | - | |
| Cco07g1779 | 216 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 88 | 109 | IPR000571 | GO:0046872(InterPro) | |
| Cco07g1779 | 216 | Gene3D | - | 78 | 155 | - | - | |
| Cco07g1779 | 216 | SMART | c3hfinal6 | 84 | 110 | IPR000571 | GO:0046872(InterPro) | |
| Cco07g1779 | 216 | SMART | c3hfinal6 | 119 | 142 | IPR000571 | GO:0046872(InterPro) | |
| Cco07g1779 | 216 | SUPERFAMILY | CCCH zinc finger | 83 | 114 | IPR036855 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco07g1779 | Cco-Chr7:31936566 | Cco11g0213 | Cco-Chr11:2060806 | 6.60E-46 | dispersed | |
| Cco07g1779 | Cco-Chr7:31936566 | Cco03g1644 | Cco-Chr3:31120749 | 5.10E-46 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 59716 | PF00642 | zf-CCCH | 1.20E-05 | CL0537 | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco07g1779 | - | - | - | 0.0 |