Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1802 ATGATGTTAGTTAGGATGGGAGAACTCTATCTTACAATTCTAATACTGGCTTGCCTTCATTATCTTGCACTGTCTGATTTTCAAGGTGATGCACTCTTTGCATTGAAGAATGCATTGAATGCAACAGCAAATCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGTCCAATGTTATATGTAGTGGAAGCAATGTGATCTCTGTATCCTTATCCACAATGGGATTTACTGGAACCTTGTCTCCACGAATTGGACTTCTAAAATCACTTTCAACCCTGATTTTGCAGGGAAATTACATAACTGGAGAGATACCTAAGGATTTTGGAAACCTGACAAATTTGGTTAGTTTGGATTTGGGAAATAACAGCCTAACTGGCCAAATACCATCGTCCCTTGGTAACCTTAAGAAACTACAGTTCCTAACTCTGAGTCAAAATCGTCTAACGGGGACTATTCCAGAGTCACTTTCAACCCTTCCTAGCTTGATCAATCTTCTGCTTGATTCAAATGATCTCAGTGGGCCAATTCCGCAGCAGTTATTTCAAGTTCCAAAATTCAACTTTTCTGCAAACAAGTTAAATTGTGGCGGGAAGTCTCTTCATGCCTGTGCTTCAGACAGTACAAACTCAGGTTCTTCAAATAAACCCAAGGTTGGCCTTATAGTTGGAATAATTGCTGGGTTTACCGTTGCTCTTCTTTTGGTGGGAGTATTATTTTTCTTGTCCAAGGGTAGATATAAAAGCTACAAGCGCGAAGTGTTTGTAGATGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAACTACAGCTAGCCACAGACAACTTTAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTGTACAAAGGGGTGCTTGCAGATGGCACCAAAGTTGCTGTGAAACGGTTGACTGATTATGAAAGTCCAGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTGTTGCGTCTCATTGGGTTCTGTACAACTCAGACAGAACGCCTATTGGTGTATCCCTTTATGCAGAACTTGAGTGTTGCCTACCGTCTTCGAGAACTTAAGCCCGGAGAGGCTGTTCTAGATTGGCCTACTCGGAAACGGGTGGCATTGGGCACAGCTCGTGGTTTAGAGTATCTTCATGAACATTGCAACCCAAAGATTATTCATCGAGATGTCAAGGCAGCTAATGTATTGCTTGATGAAGATTTTGAAGCAGTTGTCGGCGATTTTGGCTTAGCAAAGTTGGTTGATGTTAGAAAGACCAATGTCACTACTCAAGTTCGAGGGACAATGGGTCACATAGCACCGGAGTACTTATCTACTGGAAAATCATCCGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTTGTAACGGGGCAACGTGCAATCGACTTCTCACGCTTAGAAGAAGAAGACGATGTTTTACTGCTCGACCATGTTAAGAAACTAGAAAGGGAGAAACGACTTGATGCCATTGTCGATCGAAATCTAAAAAACTACAACATTCAAGAGGTGGAGATGATGATTCAAGTTGCATTGCTGTGTACACAGCCATGCTCGGATGACCGCCCAGCAATGTCACAAGTCGTTCGGATGCTCGAGGGAGAGGGATTGGCAGAGAGGTGGGAAGAATGGCAGCATTTGGAGGTGACTCGCAGGCAAGAGTACGAGAGACTGCAGAGAAGATTTGAATGGGGAGAAGATTCAATACATAGACAGGATGCAATCCAGTTGTCTGGTGGAAGATGA 1833 42.77 MMLVRMGELYLTILILACLHYLALSDFQGDALFALKNALNATANQLTDWNPNQVNPCTWSNVICSGSNVISVSLSTMGFTGTLSPRIGLLKSLSTLILQGNYITGEIPKDFGNLTNLVSLDLGNNSLTGQIPSSLGNLKKLQFLTLSQNRLTGTIPESLSTLPSLINLLLDSNDLSGPIPQQLFQVPKFNFSANKLNCGGKSLHACASDSTNSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLSKGRYKSYKREVFVDVAGEVDRRIAFGQLKRFAWRELQLATDNFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGEAVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLKNYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYERLQRRFEWGEDSIHRQDAIQLSGGR 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32152248 32158791 + CcPI632755_07g018020.1 Cco07g1802 184455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1802 610 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Cco07g1802 610 SMART serkin_6 288 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1802 610 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515(InterPro)
Cco07g1802 610 Gene3D Ribonuclease Inhibitor 26 207 IPR032675 -
Cco07g1802 610 Gene3D Transferase(Phosphotransferase) domain 1 365 581 - -
Cco07g1802 610 ProSiteProfiles Protein kinase domain profile. 288 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1802 610 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
Cco07g1802 610 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 208 - -
Cco07g1802 610 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Cco07g1802 610 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524(InterPro)
Cco07g1802 610 SUPERFAMILY Protein kinase-like (PK-like) 268 562 IPR011009 -
Cco07g1802 610 SUPERFAMILY L domain-like 28 196 - -
Cco07g1802 610 Pfam Protein tyrosine and serine/threonine kinase 291 561 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1802 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1802 610 FunFam Somatic embryogenesis receptor-like kinase 1 365 581 - -
Cco07g1802 610 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 608 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1802 Cco-Chr7:32152248 Cco10g0883 Cco-Chr10:18529458 8.20E-126 dispersed
Cco07g1802 Cco-Chr7:32152248 Cco07g1803 Cco-Chr7:32168377 1.00E-232 tandem
Cco02g0011 Cco-Chr2:137649 Cco07g1802 Cco-Chr7:32152248 1.10E-175 transposed
Cco07g1002 Cco-Chr7:23021312 Cco07g1802 Cco-Chr7:32152248 1.90E-138 transposed
Cco08g0388 Cco-Chr8:8528772 Cco07g1802 Cco-Chr7:32152248 5.10E-139 transposed
Cco01g0542 Cco-Chr1:5265459 Cco07g1802 Cco-Chr7:32152248 1.70E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87007 PF00069 Pkinase 1.80E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1802 - - - 0.0