Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco07g1803 ATGGGAAAACTCTATCTTACAACTCTAGTTCTGGCTTGCTTTCATTACTTTGCTCTGTCTGATTTTCAAGGTGAAGCACTCATTGCATTCAAGAACGCATTGAATGCAACAAATAGTCAGCTCAAAGATTGGAACCCAAATCATGTCAATCCATGCAGTAGTTGGTCCAATATTATGTGTAATGGGAACAATGTGACAGCTATAACCTTGCCAACAATGGGATTTACTGGAACCTTGTCTCCAACAATTGTTGCTATAAAATCTCTTTCAACCCTGAACTTGAAGGGAAATTACATAACTGGAGGGATACCAGAGGAATTTGGAAACCTGACAAATTTGGTCACTTTGGATCTAGAAAATAACAGCCTAATTGGTCAAATACCATCGTCCCTGGGTAATCTTAAGAAACTACGGTTCCTAACTCTGAGTCAAAATCATCTAACTGGGACTATTCCTGAGACATTTTCAACCCTTCCTAGCTTGATCAATCTTTCGCTTGATTCAAATAATCTCAGTGGCCAAATTCCGGAGCAGTTATTTCAAGTTTCAAAATTCAACTTTTCTGGAAATAAATTGGATTGTGGCAAAAATTCACGTCGGTCCTGTGATTCGGACAGTACAAACTCAGGTGCTTCAAATAAGTCGAAGGTCGGCCTCATAGCTGGACTTATTGCTGGGTTAATAGTTGCTCTTCTTTTGGTCGGATTATTATTTTTATTGTGTAAGCGTAGATATAAAGGCTACAAGGGTGAAGTCTTCGAAGATGTTCCCGGTGAAATTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAACTACAGCTAGCTACAGAAAATTTTAGTGAGGAAAATGTTATAGGACAAGGAGGCTTTGGAAGGGTTTACAAAGGGGTGCTTGCTGATGGCACCAAGGTTGCAGTGAAACAGTCAACTAATTATGAAAGCCTTGGGGGAGATGCTGCTTTTCTGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTATTGCGGCTGATTGGGTTCTGTACAACTCAGACTGAACGCTTATTGGTATATCCCTATATGCAGAACTTGAGTGTTGACTACCATCTTCGAGAACTTAAGCCTGGGGAACCTATTTTAGATTGGCCTGCTCGAAAACGTGTGGCATTGGGCACAGCTCGTGGTTTAGGATATCTTCATGAACATTGCAATCCAAAGATTATTCACCGAGATGTTAAGGCTGCTAATGTATTACTTGATGAGGATTTTGAAGCAGTTGTTGGCGATTTTGGCCTGGCCAAGTTGGTTGATGTTAGGAGGACTAGTGTCACAACTCAAGTTCGGGGGACGGCTGGCCACATAGCACCAGAGTACTTATCCACTGGGAAATCATCAGAAAAGACTGATGTTTTTGGTTATGGCATTATGCTTTTAGAACTTATTACAGGGCAACGTGCAATCGACTTCTCACGCTTTGAAGGAGATGATGATGTTCTACTGCTAGACCATGTCAAGAAATTGGAAAGGGAGAAGCGACTCAATATTATTGTGGATGGAAACCTGAATAACTATGATATCAGAGAGGTGGAGACAATGGCCCAAGTTGCGCTCCTATGCACACAGCCATCTTCAGAAAGCCGACCAACAATGTCACAGGTCGTTCGGATGTTAGAAGGCGAGGGGCTTGCAGGGAGGTGGGAGGAATGGCAGCAGTTAGAGGTGAGTCGCAGACAAGATTACGAGAGAATGCAGAGAAGATTTGAATTGGGGAATGATTCTATTTATAGACAGGAAGCTATCCAGTTGTCTGGTGGAAGATGA 1821 41.95 MGKLYLTTLVLACFHYFALSDFQGEALIAFKNALNATNSQLKDWNPNHVNPCSSWSNIMCNGNNVTAITLPTMGFTGTLSPTIVAIKSLSTLNLKGNYITGGIPEEFGNLTNLVTLDLENNSLIGQIPSSLGNLKKLRFLTLSQNHLTGTIPETFSTLPSLINLSLDSNNLSGQIPEQLFQVSKFNFSGNKLDCGKNSRRSCDSDSTNSGASNKSKVGLIAGLIAGLIVALLLVGLLFLLCKRRYKGYKGEVFEDVPGEIDRRIAFGQLKRFAWRELQLATENFSEENVIGQGGFGRVYKGVLADGTKVAVKQSTNYESLGGDAAFLREVEMISVAVHRNLLRLIGFCTTQTERLLVYPYMQNLSVDYHLRELKPGEPILDWPARKRVALGTARGLGYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRRTSVTTQVRGTAGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAIDFSRFEGDDDVLLLDHVKKLEREKRLNIIVDGNLNNYDIREVETMAQVALLCTQPSSESRPTMSQVVRMLEGEGLAGRWEEWQQLEVSRRQDYERMQRRFELGNDSIYRQEAIQLSGGR 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32168377 32175042 + CcPI632755_07g018030.1 Cco07g1803 184456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco07g1803 606 FunFam Somatic embryogenesis receptor-like kinase 1 361 577 - -
Cco07g1803 606 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524(InterPro)
Cco07g1803 606 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 605 - -
Cco07g1803 606 Pfam Leucine Rich Repeat 160 179 IPR001611 GO:0005515(InterPro)
Cco07g1803 606 Gene3D Ribonuclease Inhibitor 21 204 IPR032675 -
Cco07g1803 606 SMART serkin_6 284 557 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1803 606 SMART LRR_typ_2 134 157 IPR003591 -
Cco07g1803 606 SMART LRR_typ_2 110 133 IPR003591 -
Cco07g1803 606 SMART LRR_typ_2 158 182 IPR003591 -
Cco07g1803 606 ProSiteProfiles Protein kinase domain profile. 284 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco07g1803 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1803 606 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515(InterPro)
Cco07g1803 606 SUPERFAMILY L domain-like 23 193 - -
Cco07g1803 606 FunFam Somatic embryogenesis receptor kinase 1 253 360 - -
Cco07g1803 606 Gene3D Phosphorylase Kinase; domain 1 253 360 - -
Cco07g1803 606 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Cco07g1803 606 Gene3D Transferase(Phosphotransferase) domain 1 361 577 - -
Cco07g1803 606 Pfam Protein tyrosine and serine/threonine kinase 287 557 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco07g1803 606 SUPERFAMILY Protein kinase-like (PK-like) 263 558 IPR011009 -
Cco07g1803 606 FunFam Putative LRR receptor-like serine/threonine-protein kinase 20 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0011 Cco-Chr2:137649 Cco07g1803 Cco-Chr7:32168377 5.30E-162 dispersed
Cco07g1803 Cco-Chr7:32168377 Cco08g0388 Cco-Chr8:8528772 5.80E-124 dispersed
Cco07g1802 Cco-Chr7:32152248 Cco07g1803 Cco-Chr7:32168377 1.00E-232 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87008 PF00069 Pkinase 3.70E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco07g1803 - - - 0.0