Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0051 ATGTCTCGAAGATCGACCAGGTTAGTGGAAAAGGCGAATGAATATTTAGAGAAACCCACAAATAGTGAAACTGCAAAATCATCCAGAACTAAGAGATATGGTGTATCTAAGGGAAACCTTAAATCTTCTGGGAGTCAGAAGTGGACACGAAATAATGAGATTAGGGTAAATGAAGTTACGTGTCCTCCATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACATCTTGTAAGAGGTCAATCACAAGAGCAACTACTTCAAAGAAGTTTAGGTCCGAGGAGGGGATCAACAAAAAAGGGAGTGGGAGATTATGGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGATGATGTTTATGTGAGGAGGAGAGAAGATGCAAGCTCTGATGATGAAGACCCTGAAGTTGAGGAGTGTAGAGTGTGCTTTAAGTCTGGAAAGGCTATAATGATCGAGTGTGATGATTGTCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCGCCATTGAAGGTAATCCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAGGCTGCTAAAATGGGCAAAGAGGTTCAGTTTCCAAAGCCTCCAGAGGGTAAAAAACGGGTTAGGACAATGAGAGAGAAGCTTCTAGCAGGCGATTTGTGGGCTGCTCACATTGAAAGTTTATGGAAAGAAGTGAATGGTAACCATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACCGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTATGCAGATATTGAGATGGAATCACTTCTTAGACTGTGTGAAGTCATGAATCCTAAAGACTATTATAATGCCAAGGAAGGGGACGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGAGATTAGCTGAAATTGATAAAGAAGAGGATAGCGAAGCAGTTGATAGTGACAAAGAGTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGATGGTGATGTGGAATATGAAGAAGAGAGAGCACACATTTTACAATCTCGAAACTACTCAAGATCAACCCATGAATTGGCCGCAAATTCAAGGAAAGGACGATTTTGTGGACTACAAAAGATAGGAGCTAAGAAGATCCCAGAGCATATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCCCTACCCAAGTCTCTACCGTGTAGAAATGAAGAAATTGAGGAGATAACTACATTTATAGAAAGTGCTTTATGCGATGATCAATGCTTGGGGCGATGCTTGTACATCCATGGTGTTCCCGGAACAGGCAAGACAATGAGTGTGCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCAGGAAATATAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCAGCGCCAGAAAATATATACAGGGTTATACATGAAGCATTAACCGGGTATAGGGTTAATTGGAAAAAGGCGCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAATTGCAGGGATGATGAGCGACCTTGCATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAACCAGTCAGTTCTATACAACATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCAAATACCATGGACCTACCTGAGAAGTTACTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTCGGCCCTTATAACTATCAGCAACTTCAAGAAATCATTTCGAGCCGCCTTGAAGGAATCAATGCGTTTGAGAAACAAGCTATTGAATTCGCATCGAGAAAGGTAGCTGCTATTTCAGGAGATGCACGCCGTGCTCTGGAGATATGTAGGCGTGCAGCTGAAATTACGGATTATCATTTAAAGAAGCAGCTGAGTTTGACTTCCAACACTGCGAAAACACATGTAGGAATAACTGAGGTGGAAGCAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAATTTGGAAACAAAGTGTAGAGTCCCACCGTGCAAAACAAGTCCCTTAA 2115 41.37 MSRRSTRLVEKANEYLEKPTNSETAKSSRTKRYGVSKGNLKSSGSQKWTRNNEIRVNEVTCPPSFEQLEGKKRKTSCKRSITRATTSKKFRSEEGINKKGSGRLWKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDDEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLKPPLKVIPEGDWICGFCEAAKMGKEVQFPKPPEGKKRVRTMREKLLAGDLWAAHIESLWKEVNGNHQCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRLCEVMNPKDYYNAKEGDDIFLCEYEYDVRWHSFKRLAEIDKEEDSEAVDSDKEWKLDQNADSDSDGDVEYEEERAHILQSRNYSRSTHELAANSRKGRFCGLQKIGAKKIPEHIRCHKQTELERAKATLMLASLPKSLPCRNEEIEEITTFIESALCDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGNIRPHCFVEVNGLKLAAPENIYRVIHEALTGYRVNWKKALQLLTKRFSDVNNCRDDERPCILLIDELDLLVTRNQSVLYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIISSRLEGINAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYHLKKQLSLTSNTAKTHVGITEVEAAIQEMFQAPHIQIWKQSVESHRAKQVP 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 527966 536485 + CcPI632755_08g000510.1 Cco08g0051 184525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0051 704 Gene3D - 403 592 IPR027417 -
Cco08g0051 704 MobiDBLite consensus disorder prediction 327 342 - -
Cco08g0051 704 Pfam PHD-finger 146 189 IPR019787 -
Cco08g0051 704 SUPERFAMILY FYVE/PHD zinc finger 132 195 IPR011011 -
Cco08g0051 704 ProSiteProfiles BAH domain profile. 202 317 IPR001025 GO:0003682(InterPro)
Cco08g0051 704 Pfam ATPase family associated with various cellular activities (AAA) 447 591 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco08g0051 704 SMART PHD_3 145 190 IPR001965 -
Cco08g0051 704 Pfam BAH domain 226 315 IPR001025 GO:0003682(InterPro)
Cco08g0051 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 654 IPR027417 -
Cco08g0051 704 FunFam Origin recognition complex subunit 1 209 401 - -
Cco08g0051 704 MobiDBLite consensus disorder prediction 18 51 - -
Cco08g0051 704 FunFam Origin recognition complex subunit 1 399 597 - -
Cco08g0051 704 ProSiteProfiles Zinc finger PHD-type profile. 143 192 IPR019787 -
Cco08g0051 704 Pfam AAA lid domain 619 655 IPR041083 -
Cco08g0051 704 ProSitePatterns Zinc finger PHD-type signature. 146 189 IPR019786 -
Cco08g0051 704 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 195 690 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
Cco08g0051 704 MobiDBLite consensus disorder prediction 1 51 - -
Cco08g0051 704 Gene3D - 213 402 IPR043151 -
Cco08g0051 704 FunFam Origin recognition complex subunit 1 594 684 - -
Cco08g0051 704 MobiDBLite consensus disorder prediction 1 17 - -
Cco08g0051 704 MobiDBLite consensus disorder prediction 327 349 - -
Cco08g0051 704 FunFam Origin recognition complex subunit 1 141 208 - -
Cco08g0051 704 SMART BAH_4 177 317 IPR001025 GO:0003682(InterPro)
Cco08g0051 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 200 IPR013083 -
Cco08g0051 704 Gene3D - 593 684 - -
Cco08g0051 704 SMART AAA_5 442 595 IPR003593 GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2101 Cco-Chr2:33875642 Cco08g0051 Cco-Chr8:527966 1.70E-26 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59723 PF00004 AAA 2.50E-19 CL0023 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0051 K02603 - csv:101214082 1246.49