Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0076 ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCACCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTCGACATCTCTCCCAGCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATTCAGGAACTCACGGAGCATCAGCGCAGAGTAAGTGAAAGGAAGTGCCATAGAGTGGAAGAAACCCGACAACGCTTTGTTGAAATAACGCAGTACAAGAAACCAAGTACGCCCATTCATACTCCGAAAACAAACGACAGAATCGTCAGCGTCGCCGATATTGCGACAGTGATTGCTAAAACGGCAGCATCGGATGAAGAAGACGACGGTGGTGCAACAGTGATTGCTGTAACAATGGAGGACTTACGGCTGCTGGCTGAAATTACACTTGCATCGAAAAAGGAATATAAAAGCCTAAAACCACGTCGTTTTGGGCCTTCATAG 993 51.76 MQSTTGAGATGSRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAADSSDLDSPADQPLFDPNPSPAFHRQNSSPAEFLTASGIGEGFYTAYALNSSPTLDISPSSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRVSERKCHRVEETRQRFVEITQYKKPSTPIHTPKTNDRIVSVADIATVIAKTAASDEEDDGGATVIAVTMEDLRLLAEITLASKKEYKSLKPRRFGPS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1140016 1150412 + CcPI632755_08g000760.1 Cco08g0076 184550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0076 330 Pfam Helix-loop-helix DNA-binding domain 176 221 IPR011598 GO:0046983(InterPro)
Cco08g0076 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 235 IPR036638 GO:0046983(InterPro)
Cco08g0076 330 Coils Coil 210 237 - -
Cco08g0076 330 CDD bHLH_AtbHLH_like 175 227 IPR045239 -
Cco08g0076 330 Gene3D - 171 245 IPR036638 GO:0046983(InterPro)
Cco08g0076 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983(InterPro)
Cco08g0076 330 FunFam Transcription factor bHLH130 family 171 241 - -
Cco08g0076 330 MobiDBLite consensus disorder prediction 1 17 - -
Cco08g0076 330 SMART finulus 176 226 IPR011598 GO:0046983(InterPro)
Cco08g0076 330 MobiDBLite consensus disorder prediction 1 25 - -
Cco08g0076 330 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 231 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco08g0076 330 MobiDBLite consensus disorder prediction 115 141 - -
Cco08g0076 330 MobiDBLite consensus disorder prediction 57 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0076 Cco-Chr8:1140016 Cco10g1712 Cco-Chr10:30666634 6.20E-27 dispersed
Cco08g0076 Cco-Chr8:1140016 Cco02g1832 Cco-Chr2:31226410 3.30E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59724 PF00010 HLH 4.80E-10 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0076 - - - 0.0