Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0076 | ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCACCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTCGACATCTCTCCCAGCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATTCAGGAACTCACGGAGCATCAGCGCAGAGTAAGTGAAAGGAAGTGCCATAGAGTGGAAGAAACCCGACAACGCTTTGTTGAAATAACGCAGTACAAGAAACCAAGTACGCCCATTCATACTCCGAAAACAAACGACAGAATCGTCAGCGTCGCCGATATTGCGACAGTGATTGCTAAAACGGCAGCATCGGATGAAGAAGACGACGGTGGTGCAACAGTGATTGCTGTAACAATGGAGGACTTACGGCTGCTGGCTGAAATTACACTTGCATCGAAAAAGGAATATAAAAGCCTAAAACCACGTCGTTTTGGGCCTTCATAG | 993 | 51.76 | MQSTTGAGATGSRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAADSSDLDSPADQPLFDPNPSPAFHRQNSSPAEFLTASGIGEGFYTAYALNSSPTLDISPSSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRVSERKCHRVEETRQRFVEITQYKKPSTPIHTPKTNDRIVSVADIATVIAKTAASDEEDDGGATVIAVTMEDLRLLAEITLASKKEYKSLKPRRFGPS | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1140016 | 1150412 | + | CcPI632755_08g000760.1 | Cco08g0076 | 184550 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0076 | 330 | Pfam | Helix-loop-helix DNA-binding domain | 176 | 221 | IPR011598 | GO:0046983(InterPro) | |
Cco08g0076 | 330 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 173 | 235 | IPR036638 | GO:0046983(InterPro) | |
Cco08g0076 | 330 | Coils | Coil | 210 | 237 | - | - | |
Cco08g0076 | 330 | CDD | bHLH_AtbHLH_like | 175 | 227 | IPR045239 | - | |
Cco08g0076 | 330 | Gene3D | - | 171 | 245 | IPR036638 | GO:0046983(InterPro) | |
Cco08g0076 | 330 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 170 | 220 | IPR011598 | GO:0046983(InterPro) | |
Cco08g0076 | 330 | FunFam | Transcription factor bHLH130 family | 171 | 241 | - | - | |
Cco08g0076 | 330 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cco08g0076 | 330 | SMART | finulus | 176 | 226 | IPR011598 | GO:0046983(InterPro) | |
Cco08g0076 | 330 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cco08g0076 | 330 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 47 | 231 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cco08g0076 | 330 | MobiDBLite | consensus disorder prediction | 115 | 141 | - | - | |
Cco08g0076 | 330 | MobiDBLite | consensus disorder prediction | 57 | 84 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g0076 | Cco-Chr8:1140016 | Cco10g1712 | Cco-Chr10:30666634 | 6.20E-27 | dispersed | |
Cco08g0076 | Cco-Chr8:1140016 | Cco02g1832 | Cco-Chr2:31226410 | 3.30E-12 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59724 | PF00010 | HLH | 4.80E-10 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0076 | - | - | - | 0.0 |