Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0089 ATGCATGGCTACAGCCGCTTGAACACTTCGCGTTCCACTGTCTCGCAGTCGCCGCCGGCCTCGCCTCGGCATCGTCAACTAAGGAGTCGGAGTGGCAGTCATAGTGGTAGCGGTAACGGCGGTTTTAGTGTTCGTGACTCGAAGCAGAGCAGCATTATGGAGAAATTGGTTTTTCTTATTTTGTCGGCGGTGTTCAGAAGGAAAGGGCTACTTCTGTTTGCTCCCTTGTTGTATATTTCAATGATGTTATTGTATATGGGCTCCTTGAATTTCGATGTTTCTATTTCCAATCTGAAAACCAGGGTCGTTTCAGTTAACAAACGAGCTCCGCCGGGGTCTGTGTATAGAAGTCCTCAGGTTTTTGAGAAGCTATGGCCTTTCATGGAAGCTGAGAGCCGAAATAGTACCACACATGCGTTGTCAACTGCATGGAATTCGAGAGTGCACCATGTTTGGAAACCATGCATCAGTAGGAGCACTATGACAGAGTTACCAAAGTCCAATGGTTTTCTTATCATTGAAGCCAATGGTGGGTTAAATCAGCAAAGGTTGTCGATATGTGATGCAGTTGCAGTGGCTGGACTACTGAATGCTTCTCTTGTCATTCCAATATTTCATTTGAATAGTGTTTGGCGAGATTCAAGCAAATTTGGTGATATTTTCGATGAAGATTTTTTCATACAAGCATTAAGCAAGCATGTTAATATTGTGAGAGAGCTCCCAGCTGATGTACTGCAGCAGTATGATAATAATATAAGCAGTATTGTGAACTTAAGAGTAAAAGCATGGTCAAGCCCAATGTACTATTTGCATAAAGTCCTTCCAAAGCTCTTGCAATTGAGGGCTGTAAGGATTGCCCCATTCTCCAACCGGTTGGCTCATGGAGTTCCTTCAGATGTTCAAGCACTTAGATGCTTAGCCAATTTTGAGGCTTTGAGGTTTGCAGAATCTATAAGAATACTGGCAGATCTCATGGTTGATCGGATGATAAAAAAAAGCTCTCAGAGTGGAGGAAAATATATTTCTGTGCATCTTCGCTTTGAGGAGGACATGGTTGCATTTTCGTGCTGTGAATATGATGGTGGAGCGGAAGAGAAGCATGAGATGGACCTGGCTAGAGAAAGGAGCTGGAGAGGAAAATTCAGAAGAAGGGGGAGGGTGATAAGGCCTGGTGCTAATAGGGTGGATGGAAAATGTCCTTTAACCCCACTGGAGGTCGGACTGATGCTTAGAGGAATGGGTTTTGATAATACAACTTCCATATATGTTGCAGCAGGAAAAATTTATAAAGCAGAGAAGTATATGGCTCCACTTAGGCAGATGTTTCCACGTTTAGAAACTAAAGATACTATAGCTACTAAGGAAGAACTTGCTCCATTCCAGGGCCACTCTTCTCGATTGGCTGCTCTTGATTACACAGTATGTCTTCATAGTGAAGTCTTTGTCACAACTCAAGGTGGGAATTTCCCCCACTTTTTGACGGGTCACAGGCGCTATATTTATGGCGGACATGCAAAGACAGTCAAACCAGATAAGAGGAAACTAGCGTTAATTTTTGATGATCCTAATATACGATGGCAAAACTTTGCACAACAAATGCAAGATATGCTTCGCCACAACGATCAAAAGGGAATGGAAATGAAAAAGCCCAGTGGATCGTTGTATACGTTTCCCATGCCAGATTGCATGTGCAAAGTACCAAACACGAAGAACCCATGA 1719 43.28 MHGYSRLNTSRSTVSQSPPASPRHRQLRSRSGSHSGSGNGGFSVRDSKQSSIMEKLVFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQVFEKLWPFMEAESRNSTTHALSTAWNSRVHHVWKPCISRSTMTELPKSNGFLIIEANGGLNQQRLSICDAVAVAGLLNASLVIPIFHLNSVWRDSSKFGDIFDEDFFIQALSKHVNIVRELPADVLQQYDNNISSIVNLRVKAWSSPMYYLHKVLPKLLQLRAVRIAPFSNRLAHGVPSDVQALRCLANFEALRFAESIRILADLMVDRMIKKSSQSGGKYISVHLRFEEDMVAFSCCEYDGGAEEKHEMDLARERSWRGKFRRRGRVIRPGANRVDGKCPLTPLEVGLMLRGMGFDNTTSIYVAAGKIYKAEKYMAPLRQMFPRLETKDTIATKEELAPFQGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLTGHRRYIYGGHAKTVKPDKRKLALIFDDPNIRWQNFAQQMQDMLRHNDQKGMEMKKPSGSLYTFPMPDCMCKVPNTKNP 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1419938 1433079 + CcPI632755_08g000890.1 Cco08g0089 184563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0089 572 CDD O-FucT_plant 170 504 IPR024709 -
Cco08g0089 572 MobiDBLite consensus disorder prediction 1 45 - -
Cco08g0089 572 Pfam GDP-fucose protein O-fucosyltransferase 170 499 IPR019378 -
Cco08g0089 572 PANTHER O-FUCOSYLTRANSFERASE FAMILY PROTEIN 62 565 IPR024709 -
Cco08g0089 572 PIRSF UCP009360 32 568 IPR024709 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0089 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0657 Cco-Chr1:6710825 Cco08g0089 Cco-Chr8:1419938 8.20E-189 dispersed
Cco04g1600 Cco-Chr4:31320580 Cco08g0089 Cco-Chr8:1419938 2.40E-76 dispersed
Cco05g2856 Cco-Chr5:36197197 Cco08g0089 Cco-Chr8:1419938 1.80E-87 dispersed
Cco08g0089 Cco-Chr8:1419938 Cco11g1608 Cco-Chr11:28923074 6.00E-155 dispersed
Cco08g0089 Cco-Chr8:1419938 Cco11g1477 Cco-Chr11:27575453 1.00E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1491 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00035 Cam08g0034 Cec08g0216 Cco08g0089 Clacu08g0051 Cmu08g0050 Cre08g0040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00026 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010910 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31