Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0096 ATGGGGAGAGGAAAGATTGAAATAAAGAGAATAGAAAACACAACAAATCGACAAGTGACATTCTGCAAGAGAAGAAATGGACTTTTGAAGAAGGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGCATCAAAACTACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACCAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAGCTGCGTCAACAAATACAAATGCTTCAGAATTCCAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTCAAAGAACTAAAGCAGCTTGAAAATAGGCTTGAAAGGGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTATCTTCAGAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCTGAAGTTGAGAGGCTCCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTCTCTCCTAATATGATGGAAGGTGGAGCTGTTACTTACTCTCATCAAGACAAGAAGATGCTTCATCTTGGGTGA 672 40.92 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFSPNMMEGGAVTYSHQDKKMLHLG 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1584628 1592148 - CcPI632755_08g000960.1 Cco08g0096 184570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0096 223 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g0096 223 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Cco08g0096 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0096 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0096 223 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0096 223 Coils Coil 124 163 - -
Cco08g0096 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0096 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0096 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0096 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0096 223 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco08g0096 223 Pfam K-box region 86 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g0096 223 Gene3D - 14 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0096 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco08g0096 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1961 Cco-Chr2:32534100 Cco08g0096 Cco-Chr8:1584628 9.00E-53 dispersed
Cco03g0720 Cco-Chr3:7396523 Cco08g0096 Cco-Chr8:1584628 2.70E-72 dispersed
Cco04g2193 Cco-Chr4:35570562 Cco08g0096 Cco-Chr8:1584628 1.20E-71 dispersed
Cco06g0024 Cco-Chr6:245863 Cco08g0096 Cco-Chr8:1584628 2.10E-34 dispersed
Cco07g1016 Cco-Chr7:23251817 Cco08g0096 Cco-Chr8:1584628 1.50E-10 dispersed
Cco08g0096 Cco-Chr8:1584628 Cco08g1206 Cco-Chr8:23785466 1.50E-37 dispersed
Cco08g0096 Cco-Chr8:1584628 Cco08g0104 Cco-Chr8:1680178 1.20E-26 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59726 PF01486 K-box 8.60E-27 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0096 K09264 - csv:101208072 415.616