Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0096 | ATGGGGAGAGGAAAGATTGAAATAAAGAGAATAGAAAACACAACAAATCGACAAGTGACATTCTGCAAGAGAAGAAATGGACTTTTGAAGAAGGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGCATCAAAACTACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACCAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAGCTGCGTCAACAAATACAAATGCTTCAGAATTCCAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTCAAAGAACTAAAGCAGCTTGAAAATAGGCTTGAAAGGGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTATCTTCAGAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCTGAAGTTGAGAGGCTCCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTCTCTCCTAATATGATGGAAGGTGGAGCTGTTACTTACTCTCATCAAGACAAGAAGATGCTTCATCTTGGGTGA | 672 | 40.92 | MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFSPNMMEGGAVTYSHQDKKMLHLG | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1584628 | 1592148 | - | CcPI632755_08g000960.1 | Cco08g0096 | 184570 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0096 | 223 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco08g0096 | 223 | FunFam | agamous-like MADS-box protein AGL11 | 13 | 96 | - | - | |
Cco08g0096 | 223 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0096 | 223 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0096 | 223 | SUPERFAMILY | SRF-like | 2 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0096 | 223 | Coils | Coil | 124 | 163 | - | - | |
Cco08g0096 | 223 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0096 | 223 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0096 | 223 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0096 | 223 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0096 | 223 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cco08g0096 | 223 | Pfam | K-box region | 86 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco08g0096 | 223 | Gene3D | - | 14 | 77 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0096 | 223 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 186 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco08g0096 | 223 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1961 | Cco-Chr2:32534100 | Cco08g0096 | Cco-Chr8:1584628 | 9.00E-53 | dispersed | |
Cco03g0720 | Cco-Chr3:7396523 | Cco08g0096 | Cco-Chr8:1584628 | 2.70E-72 | dispersed | |
Cco04g2193 | Cco-Chr4:35570562 | Cco08g0096 | Cco-Chr8:1584628 | 1.20E-71 | dispersed | |
Cco06g0024 | Cco-Chr6:245863 | Cco08g0096 | Cco-Chr8:1584628 | 2.10E-34 | dispersed | |
Cco07g1016 | Cco-Chr7:23251817 | Cco08g0096 | Cco-Chr8:1584628 | 1.50E-10 | dispersed | |
Cco08g0096 | Cco-Chr8:1584628 | Cco08g1206 | Cco-Chr8:23785466 | 1.50E-37 | dispersed | |
Cco08g0096 | Cco-Chr8:1584628 | Cco08g0104 | Cco-Chr8:1680178 | 1.20E-26 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59726 | PF01486 | K-box | 8.60E-27 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0096 | K09264 | - | csv:101208072 | 415.616 |