Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0104 ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCGATGCTCAAATTGGAGTTGTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGAAATGCTTTGGGAGGAGGCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAACAACTTGAAATTTGGATTTGTCAAGTGCGTACTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGAGGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA 615 41.14 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAQIGVVIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMEENISNTTNIEPVNITNCQYPLTIQDELFQLCT 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1680178 1683361 - CcPI632755_08g001040.1 Cco08g0104 184578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0104 204 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0104 204 ProSiteProfiles K-box domain profile. 88 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g0104 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 178 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco08g0104 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0104 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0104 204 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0104 204 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco08g0104 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0104 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0104 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0104 204 Pfam K-box region 88 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g0104 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g0104 204 Gene3D - 15 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0104 Cco-Chr8:1680178 Cco08g1206 Cco-Chr8:23785466 1.00E-32 dispersed
Cco08g0096 Cco-Chr8:1584628 Cco08g0104 Cco-Chr8:1680178 1.20E-26 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59727 PF01486 K-box 1.70E-17 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0104 - - - 0.0