Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0104 | ATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCGATGCTCAAATTGGAGTTGTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGAAATGCTTTGGGAGGAGGCGAAGGAATAATGACATTGGATGAGCTTGATATGTTTGAGAAACAACTTGAAATTTGGATTTGTCAAGTGCGTACTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGAGGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA | 615 | 41.14 | MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAQIGVVIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGEGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMEENISNTTNIEPVNITNCQYPLTIQDELFQLCT | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1680178 | 1683361 | - | CcPI632755_08g001040.1 | Cco08g0104 | 184578 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0104 | 204 | SUPERFAMILY | SRF-like | 1 | 76 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0104 | 204 | ProSiteProfiles | K-box domain profile. | 88 | 177 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco08g0104 | 204 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 178 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco08g0104 | 204 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0104 | 204 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 56 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0104 | 204 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0104 | 204 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cco08g0104 | 204 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0104 | 204 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0104 | 204 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0104 | 204 | Pfam | K-box region | 88 | 172 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco08g0104 | 204 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g0104 | 204 | Gene3D | - | 15 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g0104 | Cco-Chr8:1680178 | Cco08g1206 | Cco-Chr8:23785466 | 1.00E-32 | dispersed | |
Cco08g0096 | Cco-Chr8:1584628 | Cco08g0104 | Cco-Chr8:1680178 | 1.20E-26 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59727 | PF01486 | K-box | 1.70E-17 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0104 | - | - | - | 0.0 |