Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0116 ATGCTCAAGTTGGCAAACGAATCATGCAAGTGCTTGCCTCAGAATCTCTTTCAATTGTTGAGGTTATTTGCTCCAAACGTTGATGGTGCTTCTACTTCAGCAAGGTGTGCAAACAAGCTTGATAGATGTACTGCTAGAAGTTATATGCAAAAACCTCATGCTGTCGTTCCCCAATTAGAGCAGGGAATAGAGGCCATTGAAGGCATAATGATGGATTTGGATGAGGAGGGAGAGTCACACTTGAATGCCAATTTTGGCTCTTCTTTGAGGGTTTTGAATTTGAGTGATTGCAATTTGTGGGATGGAGATTTACCTAATGACCTTCATAGCTTAGCTTCAGTGGAAATCCTTGATCTAAGCCAAAACCATTTCACCATATTGCCTGAAAGCATTTCTCATCTTGTTAATTTGAGGGATTTAGTTTTGGAAGAATGTTTTAATCTTTTGTGTTTGCCAAAGCTTCCACTTAGTGTTAGAGATGTGGAAGCAAGGGATTGTGTTTCACTTAAAGAATATTACAATCAAGAGAAACAAATTCCTTCAAGTGAAATGGGGATCACTTGTATTCGTTGTCCTACATCCACTGAACCAACTCAAAGCTACAAAATTAATCAGCTTGGCCTTTCTCCTATTCACCTAAGGACAATGGCTCAACAATACCTTGAGGTACTCACATGGCAACAAAAATTCTACTATTTTTTTATTCCATATCCTAGCTTCATATTATCATGCTTTGATGAAAAGAGATATGGATTCTCAATCGCACCACATTGTCCTCCAGATTACATAAGTGAAGAAAATCCAAGGATTGGAATTGCTTTAGACGAATGCCCTCTAAAATCAGCCCTTGTGTTTGATGGCAACGAAGTTGAATCAGAAAGCACAATGGGGCTATCAGTTTTCTACATTCCAATGAATTTGATAACAGGGTGGTTGAATCAATGTTGCTGTGTTGATGTTTCAATAACTACTGATAACCCATTTGTGAAGGTCAAATGGTGTGGTGCTTCAGTATTGTATCAAGAGAATGCAGGGACTTTTATTGGGAACATTGTCAAAGCCTTTTTTGGATCTCCTGGAAGATACCATAAATCAATTGTTCATCATATTTTGAATTGTCTGAAGCGTGTACAAAGTTCTACTTTGCTGGATGGTGGAGCTGTTACCAGACTTCATGGTTTAATGCATTGCAAAGGGTGGGCCTTTAGAATAAAGAAAAAAGACATTTCGAGGACAATTGGGCCATTTCCAAAACTTCGAGCTAGTACACCACCTGAGTTTATAGAGGATTGTTCCACAATGAATGCATTTGTTGAGGCTGAAGAAAGTGAAAGTGATTACAGTATCATGTTAAAACGAAACCTCAAGACTATGCTGCTAAGGATTTTTGAGGTTTCGCTCTATGCTTTACCTCTTCATCTATTCATCTTCTAG 1434 38.42 MLKLANESCKCLPQNLFQLLRLFAPNVDGASTSARCANKLDRCTARSYMQKPHAVVPQLEQGIEAIEGIMMDLDEEGESHLNANFGSSLRVLNLSDCNLWDGDLPNDLHSLASVEILDLSQNHFTILPESISHLVNLRDLVLEECFNLLCLPKLPLSVRDVEARDCVSLKEYYNQEKQIPSSEMGITCIRCPTSTEPTQSYKINQLGLSPIHLRTMAQQYLEVLTWQQKFYYFFIPYPSFILSCFDEKRYGFSIAPHCPPDYISEENPRIGIALDECPLKSALVFDGNEVESESTMGLSVFYIPMNLITGWLNQCCCVDVSITTDNPFVKVKWCGASVLYQENAGTFIGNIVKAFFGSPGRYHKSIVHHILNCLKRVQSSTLLDGGAVTRLHGLMHCKGWAFRIKKKDISRTIGPFPKLRASTPPEFIEDCSTMNAFVEAEESESDYSIMLKRNLKTMLLRIFEVSLYALPLHLFIF 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1876101 1883363 - CcPI632755_08g001160.1 Cco08g0116 184590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0116 477 Pfam Leucine Rich Repeat 114 134 IPR001611 GO:0005515(InterPro)
Cco08g0116 477 Pfam Leucine Rich Repeat 88 111 IPR001611 GO:0005515(InterPro)
Cco08g0116 477 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Cco08g0116 477 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 2 220 - -
Cco08g0116 477 SUPERFAMILY L domain-like 87 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0116 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0116 Cco-Chr8:1876101 Cco08g0197 Cco-Chr8:3144970 2.00E-159 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1433 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00061 . Cec08g0192 Cco08g0116 Clacu08g0073 Cmu08g0072 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001249 0 4 0 0 0 5 1 5 5 2 7 4 1 4 5 1 4 0 1 5 2 1 1 2 5 4 1 5 1 0 76