Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0124 | ATGGGCTGCATGTGCTCAAGAGATTCCTCAGAACCAGAGGATAGCAATCACAAAGAGTCTGAAAAAGATCTGAACAAATCTTCAGTCCAGTTGGTTGCCCCTTCTCCCTCAAAAAGAGAGGATATGCTGTTAGAGATTCAGTTGTCAAGGCAGGCATCTAAACCAAATGGGGGTTCTGTTCATAAAGCAAAGGCCAATGGAGGTTCTGTCCATCGAGCAAAGGAGGATGATGAATCTGAGAATAAATCCATAAAGGCTGCAAAACCAAATAATGATAATGCTTCAGGAGGTGGAAAGCAGCCTGACATTTTTCGGTTAGCTAGCTTGTCTAAAGGGGCTGAAGCTGAACTTGTCATGGCTGGATGGCCTTCATGGTTAGCTTCCGTTGCTGGAGAAGCCATCAAAGGGTGGGTGCCTCGCCGGGCTGACTCCTTTGAAAAGTTAGACAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACTGGTAAAATTGTGGCATTGAAAAAAGTAAGATTTGTAAATATGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGCAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTCTAGTCACTTCCAGAATGTCGGGCAGCTTGTACCTTGTTTTTGAGTACATGGAGCATGACCTTGCTGGCCTTGCAGCAGCTCCTGGACATAAGTTTACGGAGGCTCAGATTAAATGTTATGTGCAACAATTGCTGCATGGACTTGAGCACTGTCATAGTCGGGGAATTCTGCACCGGGATATCAAAGGTTCAAATCTTCTTGTTGACAATAATGGTGTGCTTAAGATTGGAGACTTTGGTCTTGCTACCTTTTTTCAGCCTGATCAAAAGCAGCCATTGACAAGCCGGGTTGTGACATTGTGGTACAGGGCACCTGAGCTTTTGCTTGGTGCTACCCAATATGGACCTGCCATAGATCTCTGGAGCTGTGGCTGTATCGTTGCTGAGCTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTCTGTGGTTCACCATCTGAGGAGTTCTGGCAGAGAACAAAGTTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCCTTTCTGAGACATTTAAAAGTTTCCCTTCTTCAGCTCTGGCTCTTGTTAATAAGCTACTTGCTATTGAACCAGAGCACAGAGGATCAGCTACTTTAGCCCTCAGGAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGATCCGTCAAGCTTACCAAAATATCCACCGAGCAAAGAATTCGATGCCAAGCTGCGGAATGAAGAAGAAAGAAAGAAAAAGGCGGAAGCTGTGAAGGGACGCCATCCTGAATCGGTAAGAAGGGGCTCAAGAGACACCAAAGCAGTTCCTACTCCCGAATTCAATACTCAAGGAGATATTACTATGAAGGCACACCCAATCTCGAAAAAAATGAGTGTGAAATACAACCCTCAAGAAGACAGTGAGCCTCCGAGAGTTGCGCAGAATCGGTACAACCACTCAACTTCTATGGTGCACCCAAGCATTGTAGGTTTATGGGGTAAGCCTACCGAAGCCTCGAGAAATTGTGCAGAGTCAAAGACAAAGAAATCTCAGATGCATCAGTCAGTGGGAGATTTATCAACCTCTTCTCTGAAGAAGGAAGACTCGGTGTCTACTAAAGATTGTGGAATGGGTTATGTTCAAAAGAAGAACAGAATACACTACTCAGGACCATTGGTGCCTACAGGGGGAACCATTGAAGACATGCTGAAGGAGCACGAGAGACAAATCCAGCAGGCTTTTCGAAAGGCACGACTCGACAAAGCGAAGACAAACAAGAGTTATGGTGATCAGGTTTGA | 1929 | 44.74 | MGCMCSRDSSEPEDSNHKESEKDLNKSSVQLVAPSPSKREDMLLEIQLSRQASKPNGGSVHKAKANGGSVHRAKEDDESENKSIKAAKPNNDNASGGGKQPDIFRLASLSKGAEAELVMAGWPSWLASVAGEAIKGWVPRRADSFEKLDKIGQGTYSSVYKARDLETGKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLEGLVTSRMSGSLYLVFEYMEHDLAGLAAAPGHKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKGSNLLVDNNGVLKIGDFGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATQYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWQRTKLPHATSFKPQHRYKSCLSETFKSFPSSALALVNKLLAIEPEHRGSATLALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKKKAEAVKGRHPESVRRGSRDTKAVPTPEFNTQGDITMKAHPISKKMSVKYNPQEDSEPPRVAQNRYNHSTSMVHPSIVGLWGKPTEASRNCAESKTKKSQMHQSVGDLSTSSLKKEDSVSTKDCGMGYVQKKNRIHYSGPLVPTGGTIEDMLKEHERQIQQAFRKARLDKAKTNKSYGDQV | 642 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1967174 | 1971309 | - | CcPI632755_08g001240.1 | Cco08g0124 | 184598 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0124 | 642 | PANTHER | CELL DIVISION PROTEIN KINASE | 144 | 429 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Cco08g0124 | 642 | Coils | Coil | 447 | 467 | - | - | |
Cco08g0124 | 642 | Gene3D | Phosphorylase Kinase; domain 1 | 132 | 227 | - | - | |
Cco08g0124 | 642 | MobiDBLite | consensus disorder prediction | 1 | 99 | - | - | |
Cco08g0124 | 642 | FunFam | probable serine/threonine-protein kinase At1g54610 | 132 | 227 | - | - | |
Cco08g0124 | 642 | MobiDBLite | consensus disorder prediction | 553 | 581 | - | - | |
Cco08g0124 | 642 | SUPERFAMILY | Protein kinase-like (PK-like) | 138 | 437 | IPR011009 | - | |
Cco08g0124 | 642 | MobiDBLite | consensus disorder prediction | 10 | 25 | - | - | |
Cco08g0124 | 642 | MobiDBLite | consensus disorder prediction | 68 | 85 | - | - | |
Cco08g0124 | 642 | ProSiteProfiles | Protein kinase domain profile. | 145 | 429 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g0124 | 642 | MobiDBLite | consensus disorder prediction | 458 | 483 | - | - | |
Cco08g0124 | 642 | Gene3D | Transferase(Phosphotransferase) domain 1 | 228 | 469 | - | - | |
Cco08g0124 | 642 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 265 | 277 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco08g0124 | 642 | Coils | Coil | 613 | 633 | - | - | |
Cco08g0124 | 642 | SMART | serkin_6 | 145 | 429 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g0124 | 642 | MobiDBLite | consensus disorder prediction | 558 | 576 | - | - | |
Cco08g0124 | 642 | ProSitePatterns | Protein kinases ATP-binding region signature. | 151 | 174 | IPR017441 | GO:0005524(InterPro) | |
Cco08g0124 | 642 | CDD | STKc_CDK9_like | 145 | 429 | - | - | |
Cco08g0124 | 642 | Pfam | Protein kinase domain | 145 | 429 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g0124 | 642 | FunFam | probable serine/threonine-protein kinase At1g54610 | 228 | 469 | - | - | |
Cco08g0124 | 642 | MobiDBLite | consensus disorder prediction | 458 | 494 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g0124 | Cco-Chr8:1967174 | Cco11g0075 | Cco-Chr11:781104 | 3.70E-193 | dispersed | |
Cco08g0124 | Cco-Chr8:1967174 | Cco02g1754 | Cco-Chr2:30303719 | 2.80E-153 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87009 | PF00069 | Pkinase | 1.20E-70 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0124 | K08819 | - | csv:101208709 | 1206.43 |