Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0124 ATGGGCTGCATGTGCTCAAGAGATTCCTCAGAACCAGAGGATAGCAATCACAAAGAGTCTGAAAAAGATCTGAACAAATCTTCAGTCCAGTTGGTTGCCCCTTCTCCCTCAAAAAGAGAGGATATGCTGTTAGAGATTCAGTTGTCAAGGCAGGCATCTAAACCAAATGGGGGTTCTGTTCATAAAGCAAAGGCCAATGGAGGTTCTGTCCATCGAGCAAAGGAGGATGATGAATCTGAGAATAAATCCATAAAGGCTGCAAAACCAAATAATGATAATGCTTCAGGAGGTGGAAAGCAGCCTGACATTTTTCGGTTAGCTAGCTTGTCTAAAGGGGCTGAAGCTGAACTTGTCATGGCTGGATGGCCTTCATGGTTAGCTTCCGTTGCTGGAGAAGCCATCAAAGGGTGGGTGCCTCGCCGGGCTGACTCCTTTGAAAAGTTAGACAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACTGGTAAAATTGTGGCATTGAAAAAAGTAAGATTTGTAAATATGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGCAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTCTAGTCACTTCCAGAATGTCGGGCAGCTTGTACCTTGTTTTTGAGTACATGGAGCATGACCTTGCTGGCCTTGCAGCAGCTCCTGGACATAAGTTTACGGAGGCTCAGATTAAATGTTATGTGCAACAATTGCTGCATGGACTTGAGCACTGTCATAGTCGGGGAATTCTGCACCGGGATATCAAAGGTTCAAATCTTCTTGTTGACAATAATGGTGTGCTTAAGATTGGAGACTTTGGTCTTGCTACCTTTTTTCAGCCTGATCAAAAGCAGCCATTGACAAGCCGGGTTGTGACATTGTGGTACAGGGCACCTGAGCTTTTGCTTGGTGCTACCCAATATGGACCTGCCATAGATCTCTGGAGCTGTGGCTGTATCGTTGCTGAGCTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTCTGTGGTTCACCATCTGAGGAGTTCTGGCAGAGAACAAAGTTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCCTTTCTGAGACATTTAAAAGTTTCCCTTCTTCAGCTCTGGCTCTTGTTAATAAGCTACTTGCTATTGAACCAGAGCACAGAGGATCAGCTACTTTAGCCCTCAGGAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGATCCGTCAAGCTTACCAAAATATCCACCGAGCAAAGAATTCGATGCCAAGCTGCGGAATGAAGAAGAAAGAAAGAAAAAGGCGGAAGCTGTGAAGGGACGCCATCCTGAATCGGTAAGAAGGGGCTCAAGAGACACCAAAGCAGTTCCTACTCCCGAATTCAATACTCAAGGAGATATTACTATGAAGGCACACCCAATCTCGAAAAAAATGAGTGTGAAATACAACCCTCAAGAAGACAGTGAGCCTCCGAGAGTTGCGCAGAATCGGTACAACCACTCAACTTCTATGGTGCACCCAAGCATTGTAGGTTTATGGGGTAAGCCTACCGAAGCCTCGAGAAATTGTGCAGAGTCAAAGACAAAGAAATCTCAGATGCATCAGTCAGTGGGAGATTTATCAACCTCTTCTCTGAAGAAGGAAGACTCGGTGTCTACTAAAGATTGTGGAATGGGTTATGTTCAAAAGAAGAACAGAATACACTACTCAGGACCATTGGTGCCTACAGGGGGAACCATTGAAGACATGCTGAAGGAGCACGAGAGACAAATCCAGCAGGCTTTTCGAAAGGCACGACTCGACAAAGCGAAGACAAACAAGAGTTATGGTGATCAGGTTTGA 1929 44.74 MGCMCSRDSSEPEDSNHKESEKDLNKSSVQLVAPSPSKREDMLLEIQLSRQASKPNGGSVHKAKANGGSVHRAKEDDESENKSIKAAKPNNDNASGGGKQPDIFRLASLSKGAEAELVMAGWPSWLASVAGEAIKGWVPRRADSFEKLDKIGQGTYSSVYKARDLETGKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLEGLVTSRMSGSLYLVFEYMEHDLAGLAAAPGHKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKGSNLLVDNNGVLKIGDFGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATQYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWQRTKLPHATSFKPQHRYKSCLSETFKSFPSSALALVNKLLAIEPEHRGSATLALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEERKKKAEAVKGRHPESVRRGSRDTKAVPTPEFNTQGDITMKAHPISKKMSVKYNPQEDSEPPRVAQNRYNHSTSMVHPSIVGLWGKPTEASRNCAESKTKKSQMHQSVGDLSTSSLKKEDSVSTKDCGMGYVQKKNRIHYSGPLVPTGGTIEDMLKEHERQIQQAFRKARLDKAKTNKSYGDQV 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1967174 1971309 - CcPI632755_08g001240.1 Cco08g0124 184598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0124 642 PANTHER CELL DIVISION PROTEIN KINASE 144 429 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cco08g0124 642 Coils Coil 447 467 - -
Cco08g0124 642 Gene3D Phosphorylase Kinase; domain 1 132 227 - -
Cco08g0124 642 MobiDBLite consensus disorder prediction 1 99 - -
Cco08g0124 642 FunFam probable serine/threonine-protein kinase At1g54610 132 227 - -
Cco08g0124 642 MobiDBLite consensus disorder prediction 553 581 - -
Cco08g0124 642 SUPERFAMILY Protein kinase-like (PK-like) 138 437 IPR011009 -
Cco08g0124 642 MobiDBLite consensus disorder prediction 10 25 - -
Cco08g0124 642 MobiDBLite consensus disorder prediction 68 85 - -
Cco08g0124 642 ProSiteProfiles Protein kinase domain profile. 145 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0124 642 MobiDBLite consensus disorder prediction 458 483 - -
Cco08g0124 642 Gene3D Transferase(Phosphotransferase) domain 1 228 469 - -
Cco08g0124 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0124 642 Coils Coil 613 633 - -
Cco08g0124 642 SMART serkin_6 145 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0124 642 MobiDBLite consensus disorder prediction 558 576 - -
Cco08g0124 642 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524(InterPro)
Cco08g0124 642 CDD STKc_CDK9_like 145 429 - -
Cco08g0124 642 Pfam Protein kinase domain 145 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0124 642 FunFam probable serine/threonine-protein kinase At1g54610 228 469 - -
Cco08g0124 642 MobiDBLite consensus disorder prediction 458 494 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0124 Cco-Chr8:1967174 Cco11g0075 Cco-Chr11:781104 3.70E-193 dispersed
Cco08g0124 Cco-Chr8:1967174 Cco02g1754 Cco-Chr2:30303719 2.80E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87009 PF00069 Pkinase 1.20E-70 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0124 K08819 - csv:101208709 1206.43