Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0131 ATGGATAGCGAGTTACAGAGATTGTTTTCTTCACGAATAAACCGTAGAGGAGAGCGAAATATTCAAAATCAGCATGCTAAAGATGTTGAAGGAGGTTTCTCGTCTCCTGAAAAGTTGCCTTCGGATTACCCAATGAAGATAGTTTGGAAGAAGGGATTTATTCGATTATTTCTTGTGGGTGGAATTTTATGGATGTTGCTGATTCTCACTGCCTCCCTCTTTCATGTTTGGTCTTGCCGTTCTTCTATCACATTTTTCTCCGCTATTTGTAATAAAGAAAGTAAGGTTTTCACGATCTTAGACTCAATGGGATTAATGTCCAAGGCTCAACACCGTTGTTCAATTCCCTTGATGGATGAAGCTGATAGAGTAGTCATTCCAAAAGGAAGAACTCCAGATGAAATTGTCAAAAGACTTGTCTACATCACTGAAGCTGAGTACTCATTAAATGGATCTCAAACATCCCCACTGTTTGGAGGACATCAGAACTGGACTCAAAGGGAGCAAAGCTTTAAACTAAAACCAACCATGAAGGTGCATTGTGGTTTTATGCGAAATGGTGGGGCTGAAATGGTTCCTGCTGATATCAAGTATGTCAAGAAGTGTAGGTTTGTGGTTGCGTCAGGAATTTTTGATGGATATGACGTTCCTCGTCAGCCTTCGAATATAAGTGTTCGCTCTAAGGATCTATTCTGTTTTCTTATGGTGGTAGATGAGATTTCTATGCAATTTATAAGAGAAAACGTTACTATTGAGGAGGATAATGATGGAGGAAAATGGGTTGGTATCTGGCGGCTTGTCTTACTAAAGTATCCACCCTATGATGAGCCAAGAAGAAATGGAAAGGTGCCAAAGATATTAACTCATCGGTTATTCCCTCAAGCACAATATAGTATCTGGATTGATGGTAAAATGGAGTTGATAGTAGACCCTTTGCTCATTCTTGAAAGATACTTGTGGCGTGGGAAACATACCTTTGCCATTGCTCAACATAAGCATCACCGTAGTATCTATGAAGAGGCTGATTCTAATAAGCGAAGGAAACGATATGCCCGTCCTCTTATTGATCTTCACATGAAAATTTACCGATATGAAGGAATGGAGCCTTGGAGTCCAAAGAAGAAAACTGTTAGTGATGTTCCAGAGGGAGCCATCATTATAAGGGAGCATACAGCAATGAGTAATTTGTTTAGCTGCTTGTGGTTCAATGAAGTCCACATGTTCACACCAAGAGACCAACTGAGTTTTGGCTATGTAGTATACAGGCTAGGGGATTCTTTCAAGTTCTTCATGTTTCCAAATTGTGAGTATTACTCACTTTTTATTTTGCACCCACATACAAGAGAGCATTCTTCTCTCATAGAGTGGGTTAAAGATTGGGATCAACTTAAGGGGAATATGAGCAATATGAAAGAGTATAAACAATGGAAGCAGCGTAACGCATCGACTAGTTTGATAGAGACTAGGGGAGGATTAGGTTTGTGGACTCCTTACCCTGGAAACCTTGATTCTGTTGTACTTCCAACTGTGGTAAGATCATCAAAAGCAGGCTGA 1554 40.03 MDSELQRLFSSRINRRGERNIQNQHAKDVEGGFSSPEKLPSDYPMKIVWKKGFIRLFLVGGILWMLLILTASLFHVWSCRSSITFFSAICNKESKVFTILDSMGLMSKAQHRCSIPLMDEADRVVIPKGRTPDEIVKRLVYITEAEYSLNGSQTSPLFGGHQNWTQREQSFKLKPTMKVHCGFMRNGGAEMVPADIKYVKKCRFVVASGIFDGYDVPRQPSNISVRSKDLFCFLMVVDEISMQFIRENVTIEEDNDGGKWVGIWRLVLLKYPPYDEPRRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADSNKRRKRYARPLIDLHMKIYRYEGMEPWSPKKKTVSDVPEGAIIIREHTAMSNLFSCLWFNEVHMFTPRDQLSFGYVVYRLGDSFKFFMFPNCEYYSLFILHPHTREHSSLIEWVKDWDQLKGNMSNMKEYKQWKQRNASTSLIETRGGLGLWTPYPGNLDSVVLPTVVRSSKAG 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2038133 2041864 - CcPI632755_08g001310.1 Cco08g0131 184605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0131 517 Pfam TOD1/MUCI70, glycosyltransferase-like domain 139 446 IPR048354 -
Cco08g0131 517 PANTHER ALKALINE CERAMIDASE-RELATED 44 479 IPR006852 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0131 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g2240 Cco-Chr4:35925334 Cco08g0131 Cco-Chr8:2038133 3.00E-43 dispersed
Cco08g0131 Cco-Chr8:2038133 Cco11g1857 Cco-Chr11:31259310 1.60E-69 dispersed
Cco08g0131 Cco-Chr8:2038133 Cco03g0621 Cco-Chr3:6314869 3.40E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1405 . . . . . . . . . . . . . . Sed08g1886 . . Bhi04g02524 Tan11g0063 Cmetu01g0080 . Hepe02g3454 . Lcy10g2345 Cla08g00076 Cam08g0073 Cec08g0178 Cco08g0131 Clacu08g0087 Cmu08g0084 Cre08g0074 Cone4ag1221 . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g01450 . . . . . . Cla09g00889 Cam09g0940 Cec09g0944 Cco09g0947 . . Cre09g0911 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004952 1 5 1 0 1 1 1 1 1 2 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 41