Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0155 ATGGGAGAGCCTAGCTCAATGGGGAGCCACGGCGCTGCGACGTCGAGCTATCGCGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGAGAGCCGGGAAAGAAGACGAGAATTTGGTTGGGGAGCTTCGAGACCCCGGAGATGGCGGCAGCGGCCTATGACGTCGCTGCCTACCACTTCCGTGGTCGGGATGCTCGTCTCAACTTCCCGCATCTTGTCAACTCTCTTCCCTTCCCTCTTAGCTCCACTCCTGACGACATCCGTGTTGCTGCCCACGAGGCGGCGTTGCGGTTACGAACAACACCCGCGGTTGTGTCGGAGGGTGAGGAATCTTCAGCCTCGGGTCTTGCCCCAATCACTGTCCGACTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCAACGTTGGACTCGCCGAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTTATGGAGGAGTTCTCAAATGGTACTGTGTTTGTTGATGACATGGATGATGAGATGTGGGAGAATATGCATAATGATTCGTTGTGGGATCCTTAG 555 55.14 MGEPSSMGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTPDDIRVAAHEAALRLRTTPAVVSEGEESSASGLAPITVRLSPSQIQAINESTLDSPKMWMQMSSESLLMEEFSNGTVFVDDMDDEMWENMHNDSLWDP 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2485175 2485729 + CcPI632755_08g001550.1 Cco08g0155 184629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0155 184 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0155 184 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0155 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 146 IPR051032 -
Cco08g0155 184 Pfam AP2 domain 16 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0155 184 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0155 184 CDD AP2 15 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0155 184 SMART rav1_2 16 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0155 184 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Cco08g0155 184 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677(InterPro)
Cco08g0155 184 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1277 Cco-Chr7:26791917 Cco08g0155 Cco-Chr8:2485175 3.30E-23 dispersed
Cco08g0155 Cco-Chr8:2485175 Cco10g0252 Cco-Chr10:2726744 5.90E-27 dispersed
Cco08g0155 Cco-Chr8:2485175 Cco08g0160 Cco-Chr8:2582201 2.10E-48 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59728 PF00847 AP2 3.60E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0155 - - - 0.0