Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0160 ATGGAACCCAATTATAGAGGCGTTCGTAAGCGTAAATGGGGAAAATGGGTCTCCGAAATCCGTGAACCGGGCAAAAAAACCCGAATCTGGCTCGGTAGTTACCATCTCCCGGAAATGGCCGCCGCCGCCTACGACGTCGCTGCCCTCCACCTCCGCGGCCCCGACGCTCGCCTCAACTTCCCCGAGCTGGCCGACTCCTTCCCTCGCCCTGCCAGCTCCTCCCCTGACCACATTCAAGCCGCCGCCCACATGGCTGCATTGCGCCTCGCCAATACCAAGCCGCCGGACCCTCCGGCGCCGGTTCGAGTGGGGCTGTCCCCTAGCCAGATTCAAGCCATTAATGAGTCGCCGTTGGATTCTCCCACCATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTACAGCCTCATGACTGGGACGAAGAATATAACATGCACAATCATCATTCCATTTGGGATTATTCTTCAATTTAA 474 57.59 MEPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDARLNFPELADSFPRPASSSPDHIQAAAHMAALRLANTKPPDPPAPVRVGLSPSQIQAINESPLDSPTMWMQMAAEALSLQPHDWDEEYNMHNHHSIWDYSSI 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2582201 2582674 + CcPI632755_08g001600.1 Cco08g0160 184634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0160 157 Pfam AP2 domain 3 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0160 157 Gene3D AP2/ERF domain 4 62 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0160 157 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0160 157 PRINTS Ethylene responsive element binding protein signature 43 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0160 157 SMART rav1_2 4 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0160 157 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677(InterPro)
Cco08g0160 157 CDD AP2 3 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0160 157 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 108 IPR051032 -
Cco08g0160 157 FunFam Ethylene-responsive transcription factor 2 4 62 - -
Cco08g0160 157 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1453 Cco-Chr4:29969044 Cco08g0160 Cco-Chr8:2582201 2.90E-20 dispersed
Cco05g2274 Cco-Chr5:31455193 Cco08g0160 Cco-Chr8:2582201 1.10E-20 dispersed
Cco08g0160 Cco-Chr8:2582201 Cco11g0247 Cco-Chr11:2394036 8.50E-27 dispersed
Cco08g0155 Cco-Chr8:2485175 Cco08g0160 Cco-Chr8:2582201 2.10E-48 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59729 PF00847 AP2 3.20E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0160 - - - 0.0