Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0215 ATGCTGTATGAGATTTGCTGCTCATTTAAGGTTATTTTTGGCTGGGTAGCGAGCGGAACCAAGCATAAGGATGAGAAAGAGGTGGAGGCCCTTCGACGACAAGCACTTGACAAACTTCAGGAGATGCATGATCTGAATAGTAATGATCGTGTTAAGGTAGCTGAGGCTTTGTTCAGAGATGTTTATAAGATCGATTTGTTCCTAGCTGCACCATATATCAGTATTGCATGTGCCTTTTGGGGAGAGGTGAATGATGTTTGTTTACAATCCTACAACATCACTCTTTTTCTCCCATACCGTCGCCGGCCGTTCTCCGACGCCGTCGTGTGCCTCGCCGAGACCGTCCGCCTGCTGTCTGTTTTTCCGTTTGCTGCTTCAACTTTGCAGCAATTTACTGGTGCTGTGGCGAAAATGGTTACTGCAGCGGTTGAGAATCAGGGAAGCGATATGGTAATTGAAGGTAACGAACAGAAGCCGAAGAACATTGTGTCTGATGGGTTCGATGCCAATTATCTCAAAATTTACTACGGGAAGCTTTTCCCGCATGCTGATTTTTTTAAATGGATGTCTTATGGAAATGATGGCAAGCATCCGGGCAGTGACCAATCCTATTTTGGCCGAAGAGAGTTTTCATTCACCTTAGATAATGATATTTATCTACGATTCCAATCTTTCAACAGTCTGTCAGAAATGGAAAATTCGATCAAGGAAAAATGTCCATTTAAAATTGATATTGGGCCTGTATACAGCGTGGATCCTGCAAAGAGACATGCATATGCTGGCGATAATGTATTTACTCCAGTGGAGAGAGAGCTGGTTTTTGATATTGATATGACCGATTATGATGATGTTAGATATTGTTGTTCTGGAGCTGATGTTTGCTTGGATTGCTGGCCTTTAATGACAGCTGCTATCAAAGTGATTGATACTACCCTCCGAGATGACTTTGGATTTAACCACATTCTATGGGTATTTAGTGGTCGACGTGGTGTTCACTGTTGGGTCTGTGATGGCAAAGCTAGAAGGTTGTCCAATGAACAGCGAGCTGCCATTGCTGAATATTTCCATTTATATCAGGGTAATGAAAGTAGTCGCAAGAAAATTTCTCTAACTGGTCCAGTTCTTCATCCATTTCTCGCGAGATCATACATAGAAGTTCTCAAGGATAGCTTTGAATCACAATTGCTTTGTAGTCAAAAGATTTTCTCAACTGAGGAGAGATATGAGAAAATATTAGATATGATTCATGATGAATCCATTACTTCAGAGCTTCGGGGAAGGTGGCAAGATAATAGGCGACCCTCTAAAAATGATGTTAACTCAGTAAGATGGGAACAACTGAAAAATATGTTGCAATCAGGGAAACATAAGGCACAAGGAACGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCCAGGCTTGATTTGGAGGTTACTAAACACATGAACCATCTGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGTATCTGTGTCCCTATTGACCCTGAACACTGTGATGAGTTTGATCCTACTACTGTGCCAACTGTTGCCCAGCTCCTAGAAGAACTTAATGCTGCAGACATGGAAGTAGATAGTGAGACTGACTGGGATAGAACCTCACTTGGGGAGTCTATTAGGTTTTTCAGATCCGCATTTTTACAGCCGTTACTGAAATCATGCAAGGAGGAGATAGAATCTTCGCACAATGCGAAAGTGCAACAGTCTAAAAATTCTCTGAGTTGGTAG 1764 42.12 MLYEICCSFKVIFGWVASGTKHKDEKEVEALRRQALDKLQEMHDLNSNDRVKVAEALFRDVYKIDLFLAAPYISIACAFWGEVNDVCLQSYNITLFLPYRRRPFSDAVVCLAETVRLLSVFPFAASTLQQFTGAVAKMVTAAVENQGSDMVIEGNEQKPKNIVSDGFDANYLKIYYGKLFPHADFFKWMSYGNDGKHPGSDQSYFGRREFSFTLDNDIYLRFQSFNSLSEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIKVIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNESSRKKISLTGPVLHPFLARSYIEVLKDSFESQLLCSQKIFSTEERYEKILDMIHDESITSELRGRWQDNRRPSKNDVNSVRWEQLKNMLQSGKHKAQGTRRHVEEIVFSFTYPRLDLEVTKHMNHLLKAPFCVHPKTGRICVPIDPEHCDEFDPTTVPTVAQLLEELNAADMEVDSETDWDRTSLGESIRFFRSAFLQPLLKSCKEEIESSHNAKVQQSKNSLSW 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3568790 3585852 - CcPI632755_08g002150.1 Cco08g0215 184689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0215 587 PANTHER DNA PRIMASE SMALL SUBUNIT 140 573 - GO:0003896(PANTHER)|GO:0005658(PANTHER)|GO:0006269(PANTHER)
Cco08g0215 587 Coils Coil 28 48 - -
Cco08g0215 587 CDD AE_Prim_S 181 516 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Cco08g0215 587 Pfam DNA primase small subunit 274 507 IPR002755 GO:0003896(InterPro)|GO:0006269(InterPro)
Cco08g0215 587 FunFam DNA primase 159 568 - -
Cco08g0215 587 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 173 526 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Cco08g0215 587 Gene3D DNA primase, PRIM domain 160 568 - -
Cco08g0215 587 SUPERFAMILY Prim-pol domain 169 533 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0215 K02684 - csv:101203146 891.723