Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0229 ATGACCTCCGTGTGGTGGTTGTTTCCGTTGACTATCGTCTCTCTCCTGAACACCCATTCAATTCCCTACGAAGATGGATTTGATGCTTTGAAATTTCTCGACGGTTTGGGCTCCGATAACTCCCGTGTTTTTCCGGCGAAAGTTGATTTTGATCGGTGTTTTCTCGCCGGTGATAGTGCCGGCAGAAACCTGGCCCACCACGTTGCAGTCAGAGCCGGCGGCTATGATTTCAAGAAGCTGAAGATTAAAGGGCCAAAGAAGATATTGGGCTCAAGCCCAATCCCAATTTTTGGGCCCAAGCCCATGAAAGCCGATAGAAATCTTGAAGATCCCAAGACCTCTTGA 345 48.7 MTSVWWLFPLTIVSLLNTHSIPYEDGFDALKFLDGLGSDNSRVFPAKVDFDRCFLAGDSAGRNLAHHVAVRAGGYDFKKLKIKGPKKILGSSPIPIFGPKPMKADRNLEDPKTS 114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3954220 3955207 + CcPI632755_08g002290.1 Cco08g0229 184703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0229 114 Gene3D alpha/beta hydrolase 9 111 IPR029058 -
Cco08g0229 114 Pfam alpha/beta hydrolase fold 22 74 IPR013094 GO:0016787(InterPro)
Cco08g0229 114 PANTHER ARYLACETAMIDE DEACETYLASE 21 98 IPR050466 GO:0009860(PANTHER)|GO:0052689(PANTHER)
Cco08g0229 114 MobiDBLite consensus disorder prediction 92 114 - -
Cco08g0229 114 SUPERFAMILY alpha/beta-Hydrolases 21 96 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0229 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0229 Cco-Chr8:3954220 Cco08g0232 Cco-Chr8:4072114 1.60E-22 dispersed
Cco08g0229 Cco-Chr8:3954220 Cco08g0231 Cco-Chr8:4001992 2.50E-20 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1719 . . . . . . . . . . Cma01g00879 . Car01g00803 . . Cpe06g00949 . . . . . . . . Cla08g00168 . Cec08g0085 Cco08g0229 . Cmu08g0162 Cre08g0149 . . . . . . . Cme09g00114 . . . . . . . . Sed11g1771 Cmo01g00921 Cmo09g01210 . . . Car09g01079 . Cpe02g00985 Bhi06g00124 Tan10g1851 Cmetu09g1418 . . . . . . . . . . . Lsi08g00164 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0038431 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1