Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0239 | ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCAGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTCGACTGCATTGATCATTGGCTATCCAACCACAACACTTGTCCACTCTGCCGTCTCTCCGTCCTCTCACTGTCGTCTCAACCACCACATATTCAGATCGACATGGGACTTGAATCGTCAAACGAACCACAACGCGAAGAAGCACCTCCTCCAACCAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA | 594 | 42.42 | MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSLSSQPPHIQIDMGLESSNEPQREEAPPPTSTQACQHTTPPV | 197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4158530 | 4160052 | + | CcPI632755_08g002390.1 | Cco08g0239 | 184713 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0239 | 197 | SMART | ring_2 | 109 | 150 | IPR001841 | - | |
Cco08g0239 | 197 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 155 | IPR013083 | - | |
Cco08g0239 | 197 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 21 | 173 | IPR044600 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
Cco08g0239 | 197 | CDD | RING-H2_EL5-like | 109 | 151 | - | - | |
Cco08g0239 | 197 | Pfam | Ring finger domain | 108 | 151 | IPR001841 | - | |
Cco08g0239 | 197 | ProSiteProfiles | Zinc finger RING-type profile. | 109 | 151 | IPR001841 | - | |
Cco08g0239 | 197 | SUPERFAMILY | RING/U-box | 93 | 161 | - | - | |
Cco08g0239 | 197 | MobiDBLite | consensus disorder prediction | 171 | 197 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g0239 | Cco-Chr8:4158530 | Cco08g0954 | Cco-Chr8:21416596 | 1.40E-13 | dispersed | |
Cco08g0239 | Cco-Chr8:4158530 | Cco06g1008 | Cco-Chr6:13854480 | 5.70E-12 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0239 | K19039 | - | csv:101219324 | 343.199 |