Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0239 ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCAGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTCGACTGCATTGATCATTGGCTATCCAACCACAACACTTGTCCACTCTGCCGTCTCTCCGTCCTCTCACTGTCGTCTCAACCACCACATATTCAGATCGACATGGGACTTGAATCGTCAAACGAACCACAACGCGAAGAAGCACCTCCTCCAACCAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA 594 42.42 MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSLSSQPPHIQIDMGLESSNEPQREEAPPPTSTQACQHTTPPV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4158530 4160052 + CcPI632755_08g002390.1 Cco08g0239 184713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0239 197 SMART ring_2 109 150 IPR001841 -
Cco08g0239 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 155 IPR013083 -
Cco08g0239 197 PANTHER RING-H2 FINGER PROTEIN ATL16 21 173 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cco08g0239 197 CDD RING-H2_EL5-like 109 151 - -
Cco08g0239 197 Pfam Ring finger domain 108 151 IPR001841 -
Cco08g0239 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cco08g0239 197 SUPERFAMILY RING/U-box 93 161 - -
Cco08g0239 197 MobiDBLite consensus disorder prediction 171 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0239 Cco-Chr8:4158530 Cco08g0954 Cco-Chr8:21416596 1.40E-13 dispersed
Cco08g0239 Cco-Chr8:4158530 Cco06g1008 Cco-Chr6:13854480 5.70E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0239 K19039 - csv:101219324 343.199