Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0241 ATGCTGAAGGACGTTGAGAAGAAGTACGCACTGTTTTCGAACGGGTTTCCGTCATTCCCTCGCTCGTTGTCCTTTGTGGTAGACCGAACCCTCCCTTTTCAGCTCATCCAGAAGCAGAAGCAGGATGATGAAGCTACCGCGCCGGTTGTCCAGTATACAGTGCCGGAAATTTCTTATGATATTTCAACTGAATCAGTCGGGTTTTATTGTTCTTTTGTGTATTTCGGAAGTCTTGTTCTTGGTGCTGAGCTTAAGATTCAACTGATAAATCACATAATACTCCATGAAAGCAGGAGTCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCACGAGTTGGCTTTCCAGATTCGAGACAAAATTTTACTCATACAGTCACAAAGAATGCAAGTGATCGAGTTTATGCTGCTTATAATGTATATAAGGGAAAAGCTGGACTCTCTATGAAGCCTTGCTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGCTCAGTAATGCTGTCATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCTCCAACAGAAGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCCAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTCACAAAACACCAAAGATTTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACGGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCCAGCCTAATCCTGGCATGGGGTTATTGACGGAGGTAAGGGATTCCTCACGGGGGGATGACTTGTTCACACCTGGATTTGAAGGAGTCGGCCCCATTGGAGACGAAGTGAGTGATGGGGGGGGGCGGGGAGGGGACTCCTTGTCCGAGCTTGCAGTCCTCCCGTGTGTATCAGAATATGGAGAGTCATCCATGGACGTCTCAGGTGTTTTTACAGGAGTTGGTGGGCTCTCCGGCTCCGAACTTGACAACCACCGCGGAGCTGACGGGATACATCGTTTCACTCAACCCTACGTAGTTACCATTAGTGTCATCGTTGATGATAATGGTAACTTAAACAATAAGCACATATGTGTGACTGTCCATATGTTGACACGTAATGTAGTAGTTACACATTGA 1305 45.44 MLKDVEKKYALFSNGFPSFPRSLSFVVDRTLPFQLIQKQKQDDEATAPVVQYTVPEISYDISTESVGFYCSFVYFGSLVLGAELKIQLINHIILHESRSQLFEQIVCKKVGHVGHPLGSHPFSSRVGFPDSRQNFTHTVTKNASDRVYAAYNVYKGKAGLSMKPCLPTFTKLESGSLVIDRRGSVMLSFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNSQNTKDFLSVPFTAGEFSVMKTACSFALPHILGWDRLTQPNPGMGLLTEVRDSSRGDDLFTPGFEGVGPIGDEVSDGGGRGGDSLSELAVLPCVSEYGESSMDVSGVFTGVGGLSGSELDNHRGADGIHRFTQPYVVTISVIVDDNGNLNNKHICVTVHMLTRNVVVTH 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4179239 4198355 - CcPI632755_08g002410.1 Cco08g0241 184715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0241 434 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 124 305 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cco08g0241 434 Pfam Whirly transcription factor 153 287 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cco08g0241 434 Gene3D Transcriptional Coactivator Pc4; Chain A 139 307 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco08g0241 434 SUPERFAMILY ssDNA-binding transcriptional regulator domain 144 303 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0241 K26561 - - csv:101219085 360.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0241 Cco-Chr8:4179239 Cco08g1034 Cco-Chr8:22163398 9.80E-41 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1034 . 72 276 Whirly Transcription Factor Family AT1G14410 74.8 9.7e-92 333.6
Cco08g0241 . 144 303 Whirly Transcription Factor Family AT1G71260 67.5 1.2e-59 226.9
Cco08g1034 . 67 276 Whirly Transcription Factor Family AT2G02740 73.9 2.7e-89 325.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59732 PF08536 Whirly 1.30E-53 CL0609 Cco TF