Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0241 ATGCTGAAGGACGTTGAGAAGAAGTACGCACTGTTTTCGAACGGGTTTCCGTCATTCCCTCGCTCGTTGTCCTTTGTGGTAGACCGAACCCTCCCTTTTCAGCTCATCCAGAAGCAGAAGCAGGATGATGAAGCTACCGCGCCGGTTGTCCAGTATACAGTGCCGGAAATTTCTTATGATATTTCAACTGAATCAGTCGGGTTTTATTGTTCTTTTGTGTATTTCGGAAGTCTTGTTCTTGGTGCTGAGCTTAAGATTCAACTGATAAATCACATAATACTCCATGAAAGCAGGAGTCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCACGAGTTGGCTTTCCAGATTCGAGACAAAATTTTACTCATACAGTCACAAAGAATGCAAGTGATCGAGTTTATGCTGCTTATAATGTATATAAGGGAAAAGCTGGACTCTCTATGAAGCCTTGCTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGCTCAGTAATGCTGTCATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCTCCAACAGAAGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCCAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTCACAAAACACCAAAGATTTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACGGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCCAGCCTAATCCTGGCATGGGGTTATTGACGGAGGTAAGGGATTCCTCACGGGGGGATGACTTGTTCACACCTGGATTTGAAGGAGTCGGCCCCATTGGAGACGAAGTGAGTGATGGGGGGGGGCGGGGAGGGGACTCCTTGTCCGAGCTTGCAGTCCTCCCGTGTGTATCAGAATATGGAGAGTCATCCATGGACGTCTCAGGTGTTTTTACAGGAGTTGGTGGGCTCTCCGGCTCCGAACTTGACAACCACCGCGGAGCTGACGGGATACATCGTTTCACTCAACCCTACGTAGTTACCATTAGTGTCATCGTTGATGATAATGGTAACTTAAACAATAAGCACATATGTGTGACTGTCCATATGTTGACACGTAATGTAGTAGTTACACATTGA 1305 45.44 MLKDVEKKYALFSNGFPSFPRSLSFVVDRTLPFQLIQKQKQDDEATAPVVQYTVPEISYDISTESVGFYCSFVYFGSLVLGAELKIQLINHIILHESRSQLFEQIVCKKVGHVGHPLGSHPFSSRVGFPDSRQNFTHTVTKNASDRVYAAYNVYKGKAGLSMKPCLPTFTKLESGSLVIDRRGSVMLSFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNSQNTKDFLSVPFTAGEFSVMKTACSFALPHILGWDRLTQPNPGMGLLTEVRDSSRGDDLFTPGFEGVGPIGDEVSDGGGRGGDSLSELAVLPCVSEYGESSMDVSGVFTGVGGLSGSELDNHRGADGIHRFTQPYVVTISVIVDDNGNLNNKHICVTVHMLTRNVVVTH 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4179239 4198355 - CcPI632755_08g002410.1 Cco08g0241 184715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0241 434 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 124 305 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cco08g0241 434 Pfam Whirly transcription factor 153 287 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cco08g0241 434 Gene3D Transcriptional Coactivator Pc4; Chain A 139 307 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco08g0241 434 SUPERFAMILY ssDNA-binding transcriptional regulator domain 144 303 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0241 Cco-Chr8:4179239 Cco08g1034 Cco-Chr8:22163398 9.80E-41 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59732 PF08536 Whirly 1.30E-53 CL0609 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0241 K26561 - csv:101219085 360.918