Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0251 ATGACTCCATCTAACTTGGCAAGTCAGTTTGGCGATACCACTTACACAAAAGTTTTTGTGGGTGGTTTGGCTTGGGAGACCCACAAAGATACTATGAAGAAATACTTTGAACAATTTGGCGATATCTTGGAGGCTGTTGTTATTACCGACAAAGCCACTGGACGATCCAAAGGCTATGGATTTGTCACGTTCCGAGAACCCGATGCTGCCATGAGAGCTTGCGTTGATGCTGCTCCGGTCATCGACGGCCGAAGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCCACGCCTAAGCATGAAAAAAAGAAATGGGAATTGACAGGAGGAGGAGGTGGTGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACAACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCCTACAATGTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGAACTATTACAATGTTTACGGCGGGGCAACTGCACAGTACCCCATGTACGGTACGGGTCCCGGCGGCATATTGAGCGGAGCGGCAGCGGCGGCAGCAGCATTCTACCCATATTTCCAATTCGGGGAAGGCAGCGGTGGCGGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTATCCTCACCATCTGTTTCAGTACTCAGCGGCCATTAATTCAACTGCTGCAACGACCTTCCCTCAGCACTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGTGTTTTTTGCTGTTCCACAGGCGTAA 837 50.3 MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTNYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSVFFAVPQA 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4456243 4459258 + CcPI632755_08g002510.1 Cco08g0251 184725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0251 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723(InterPro)
Cco08g0251 278 MobiDBLite consensus disorder prediction 95 116 - -
Cco08g0251 278 SMART rrm1_1 17 89 IPR000504 GO:0003723(InterPro)
Cco08g0251 278 PANTHER BOULE-RELATED 2 257 - -
Cco08g0251 278 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Cco08g0251 278 CDD RRM_RBM24_RBM38_like 16 91 - -
Cco08g0251 278 Pfam RNA recognition motif 18 73 IPR000504 GO:0003723(InterPro)
Cco08g0251 278 Gene3D - 2 116 IPR012677 -
Cco08g0251 278 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0251 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0119 Cco-Chr6:1136248 Cco08g0251 Cco-Chr8:4456243 2.40E-51 dispersed
Cco08g0251 Cco-Chr8:4456243 Cco08g1071 Cco-Chr8:22519645 1.20E-44 dispersed
Cco08g0251 Cco-Chr8:4456243 Cco11g1466 Cco-Chr11:27495752 6.50E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1758 Blo01g01688 Blo12g00810 . . Bpe02g00254 Bpe04g00327 . Bma01g02455 . . . . . . . Cpe06g00946 . . . . . . . . Cla08g00181 . Cec08g0069 Cco08g0251 . Cmu08g0171 Cre08g0160 . . . . . . . . . . Bda11g00916 . . . . . Sed08g1872 . Cmo09g01205 . . . Car09g01075 . Cpe02g00981 Bhi06g00110 Tan10g1835 Cmetu11g0599 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005770 1 3 1 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39