Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0264 ATGGCTTCTTTGGCAGCCTCCACCGCCGCCGCCTCCCTTGGCGTCTCCGAAATGCTGAGAAATCCTCTCAGCTTCTCCGGTGCCTCCGCTAGGTCAGCTCCGTCTGCTTCTAGCCCAGCCACCTTCAAAACCGTTGCGCTTTTCGGGAAGAAGCCTGCTGCACCATCCAAGCCAAAGCCCTCTGCCGTCTCCCCAGTCAACGACGAGCTCGCCAAGTGGTATGGTCCGGACAGAAGGATTTTCTTGCCGGAAGGGCTGTTGGACCGATCGGAGATCCCTGAGTATTTGAACGGAGAAGTCCCCGGCGACTATGGTTACGATCCCTTTGGACTCAGCAAGAAGCCAGAGGACTTCAGCAAATACCAAGCGTTTGAGTTGATTCATGCAAGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTCGGAGCCAACTGTGGCCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAATACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATCGTCGCGGTCATTGCTGAGGTTGTTCTTGTTGGTGGCGCTGAATATTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTTCACCCGGGAGGGCCGTTCGACCCATTGGGGTTAGCAGACGACCCAGACCAAGCAGCGATTTTGAAGGTGAAAGAGATCAAGAATGGGAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCATATGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCAAAGCATTTGAGTGATCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAA 876 51.37 MASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPATFKTVALFGKKPAAPSKPKPSAVSPVNDELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4743934 4746402 - CcPI632755_08g002640.1 Cco08g0264 184738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0264 291 Gene3D Chlorophyll a/b binding protein domain 80 291 - -
Cco08g0264 291 SUPERFAMILY Chlorophyll a-b binding protein 72 281 - -
Cco08g0264 291 FunFam Chlorophyll a-b binding protein, chloroplastic 80 291 - -
Cco08g0264 291 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 19 286 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cco08g0264 291 Pfam Chlorophyll A-B binding protein 93 254 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0264 Cco-Chr8:4743934 Cco10g1167 Cco-Chr10:24263188 2.80E-55 dispersed
Cco08g0264 Cco-Chr8:4743934 Cco02g1970 Cco-Chr2:32643188 1.10E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0264 K08916 - csv:101218137 529.635