Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0285 ATGGATACCAAAGGTCGACTCATTGCTGGTTCTCACAACAGAAATGAGTTTGTTCTCATCAATGCTGATGAGGTTGCAAGAGTGACATCTGTGAAAGAGTTAAGTGGGCAAATTTGCCAGATCTGTGGGGATGAGATAGAAATCACCGTAGATGGAGAGCCATTTGTTGCCTGTAATGAATGTGCCTTTCCAGTTTGTAGACCTTGCTATGAATATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGCAGTCCTCGGGTTGAAGGTGATGAAGAAGAAGATGATATCGATGATCTTGAGAATGAGTTTGATATTGCAAACAAGGATCCTAGCAGTGCATCTGAGGCAATGCTTTATCCTCACCTTGCCGTTGGGCGTGGTTCTCATGTTAATGGTTCTGGAAATATGGCTTCTGACCTTGACTCCTCATCTGTTCCAACTGATATCCCTCTCCTGACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATTATTCCTCCTTTTATTAGCCGTGGAAAAAAGGTCCATCCAGCGCCATTCACTGATTCCATGTCTGCCAATCCAAGGCCAATGGATCCGAAGAAGGATTTAGCTGTGTATGGATATGGAACTGTTGCGTGGAAGGAAAGAATGGAAGACTGGCGGAAGAAACAAAATGAAAGACTTCAAGTAATTAAGCATGAGGGTGGAGGTGGAAAAGGTGATGACGAGCTCGATGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCGCTTTCCAGAAAACTGCCTATCCCCTCGAGCAAGATAAACCCATACAGAATGATAATCGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTATTCTTCATCCTGTCCATGAGGCATATGGGCTGTGGTTAACATCAGTAATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCCATTGTCCGAGAAACTTACCTTGATCGGCTGTCGTTAAGATATGAAAAAGATGGCAAGCCATCAGAATTGGCTTCTATAGACGTTTATGTCAGTACAGTGGATCCATTGAAGGAGCCTCCTCTCATCACAGCAAACACCGTCCTGTCTATTCTTGCCGTCGATTATCCGGTAGACAAGGTTTCATGCTATGTTTCTGATGATGGTGCTGCGATGCTTACTTTTGAAGCCCTTTCAGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATTGAACCTCGGGCCCCAGAATGGTATTTTGCCCAGAAGGTTGACTATTTGAAAGACAAAGTTGATCCAACATTTGTGAGGGAACGACGTGCAATGAAGAGGGACTACGAAGAATTTAAAGTTCGAATCAATGGGCTTGTTGCCATGGCTCAAAAAGTTCCTGAAGATGGTTGGACAATGCAGGATGGAACTCCATGGCCCGGGAACAATGTCCGGGATCATCCTGGAATGATTCAGGTATTCCTCGGTCAAAACGGTGTCCGTGACTTGGAGGGAAATGAATTACCTCGTCTAGTGTATGTATCTCGTGAGAAGAGGCCGGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATTCTCTGGTGCGTGTTTCGGCAATTATCTCGAATGCTCCATACATTTTGAACGTTGATTGTGATCACTACATTAACAACAGCAAGGCACTTAGAGAAGCAATGTGTTTCATGATGGACCCAATTTCGGGAAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGGATTGATAGGCACGATCGATACTCTAATCGCAATGTTGTATTCTTCGATATCAACATGAAAGGATTGGATGGTATTCAAGGGCCGATATATGTCGGAACTGGATGTGTCTTTAGGAGGCAGGCTCTTTATGGCTATGATGCCCCTGCTAAGAAGAAAGCACCAAGAAGGACTTGCAACTGTCTTCCAAAATGGTGCTGCTGTTGCTGTGGAACTAGAAAGAAGACTAAAACAAAGACCAGTGATAAAAAGAAATTAAAGACCAAAGATACGTCGAAACAGATTCACGCACTTGAAAATATTGAAGAAGGAATTGAAGGAATAGATAACGAGAAATCATCTCTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCACCAGCATTCATTGCTTCCACACTCATGGAAGATGGTGGCGTGCCTGGAGGAGGGACTTCTGCTTCATTGTTGAAAGAAGCCATCCACGTAATCAGTTGCGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTAGGGTGGATATATGGGTCTGTTACAGAGGATATTTTAACAGGTTTCAAGATGCATTGCCATGGATGGAGATCAGTTTATTGCATTCCTAAAAGGCCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCTGATCGTCTACACCAAGTTCTTCGGTGGGCACTTGGGTCAGTTGAAATTCTGTTGAGTAGGCACTGTCCAATATGGTACGGATATGGATGTGGTTTGAAGTGGCTCGAGCGTTTCTCATACATAAACTCCGTTGTTTATCCATTGACGTCAGTTCCACTGATCGCTTATTGTACGCTGCCAGCTGTCTGCCTGCTTACAGGGCAGTTTATCGTCCCTGAGCTAAGCAACTATGCCAGTATAATTTTCATGGCACTCTTCATCTCTATAGCAGCAACCGGTATCCTAGAAATGCAGTGGGGAGGTGTTGGGATCCATGATTGGTGGAGAAATGAGCAGTTCTGGGTTATCGGTGGTGCTTCGTCTCATCTTTTTGCGCTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTTAACACAAATTTCACCGTCACATCCAAAGGAGGAGACGATGGGGAGTTTGCCGAGCTTTACCTCTTCAAGTGGACGTCGTTGTTGGTCCCTCCCTTGACCTTATTGATCATAAACATTATTGGAGTAGTGGTCGGAATTTCAGATGCCATCAACAATGGTTACGACTCATGGGGCCCGCTCATTGGTAAGCTGTTCTTTGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACCATTATCATTGTGTGGTCAATCCTTCTATCATCCATATTGTCGCTTTTATGGGTCCGGATCAACCCCTTCCTCGACAAGGGTGGCATTGTGTTGGAAGTTTGCGGGTTAAACTGTGACGACTAA 3270 44.37 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPSSASEAMLYPHLAVGRGSHVNGSGNMASDLDSSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPAPFTDSMSANPRPMDPKKDLAVYGYGTVAWKERMEDWRKKQNERLQVIKHEGGGGKGDDELDDTDLPMMDEGRQPLSRKLPIPSSKINPYRMIIVLRIVILCLFFHYRILHPVHEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDVYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVDPTFVRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNSLVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRKKTKTKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSVPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDD 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5178292 5183869 - CcPI632755_08g002850.1 Cco08g0285 184759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0285 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Cco08g0285 1089 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Cco08g0285 1089 CDD mRING-HC-C4C4_CesA 37 87 - -
Cco08g0285 1089 Pfam Cellulose synthase 362 1076 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cco08g0285 1089 SUPERFAMILY RING/U-box 28 107 - -
Cco08g0285 1089 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 871 IPR029044 -
Cco08g0285 1089 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cco08g0285 1089 Coils Coil 99 119 - -
Cco08g0285 1089 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 282 1057 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cco08g0285 1089 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 508 654 IPR029044 -
Cco08g0285 1089 FunFam Cellulose synthase 479 653 - -
Cco08g0285 1089 FunFam Cellulose synthase 21 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1331 Cco-Chr4:28661699 Cco08g0285 Cco-Chr8:5178292 0.00E+00 dispersed
Cco08g0285 Cco-Chr8:5178292 Cco11g1154 Cco-Chr11:22565194 0.00E+00 dispersed
Cco08g0285 Cco-Chr8:5178292 Cco10g1101 Cco-Chr10:23307788 2.60E-239 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0285 K10999 - csv:101214061 2113.19