Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0293 ATGAAGAACTTGTTTTTTTCGACCCTAATTCTTCAATCGCGATACCAGAGCCCCAAGCTTTTTCTGTACCATCAATGGCGAGGAATAGCGAAGGTTCGTCTCAAATGGGTTAAGAATCGGAGTCTCGATCACATCATCGACACGGAGACTGATTTGAAGGCCGCTTGCCTCCTTAAGGACGCCATTAAGCGCTCCTCTACTGGCTTCATCACCGCCAAATCCATCGCCGATTGGCAAAAGCTGCTTGGCCTCACCATCCCTGTTATTCGATTCATCAGGAGGTACCCAACTCTCTTTCACGAATTTCCTCATTCTCGTTACGCTAATTTGCCTTGCTTTCGTTTGACGGATACCGCACTGTTTTTAGATCAGCAAGAGAGTAATATACACCAAATTCACGAGAACGACACTGTCGAAAGACTTTGTAGAGTGCTTATGATGATGAAAACTAGGGCTATTCCTCTTCAATCCTTGCGTCCCTTAGAATGGGATCTTGGTCTGCCATGTGGTTTTGAGAGGTCATTGATTCCTAGGTATCCGGATCATTTTCGATTAGTGAAGGCTTCCAATGGGGATTGGTGTCTCCGGCTTATGGAATGGCGCGAGGAATTTGCAGTTTCAGCCTTGCAAAGGGGCAATGAGAGCTCTGAATTGGGAGATACGTATAGGCAATTCAAAAGGGGGCATACTACATTGGCTTTTCCTATGAGTTTTCCGAGGGGATATGGGGCACAAAAGAAGGTAAAAGCTTGGATGGAAGAGTTTCAGAAGTTACCTTACATTTCTCCATACGAGAGTTGTAGGCAAATCGATCCCAAAAGTGACCTCATGGAGAAAAGAGTTGTTGGGGTTCTACATGAGCTTTTGAGTTTGACTCTTCACAAAAAAACTAAGAGAAACTACTTGAGAAGCTTGAGAGAGGAAATGAATCTCCCCCATAAGTTCACTCGAATCTTCACCCGGTATCCTGGAATATTCTATCTCTCCTTGAAGTGTAAGACTACCACTGTTTCTCTCAGGGAAGGGTATCAGCGGGGAAAGCTAGTGAACCCACATCCTTTGACATGTCTAAGGGAGAAGTTCTATCATGTTATGAAGACTGGACTGTTATATCGTGGGAAAGGTGCTGAATTGTTGGCGAAGGAGGGCATTTTGCTTAATAATACAGCCGAGGTGGTGGAGGATGGTTTGGATATTGAATCAGATGAGACAGGTGACGATGAATGTTTTGTGGACAACAACTCACAAGCAGAGGAATCTGATTTAGATTAA 1272 44.34 MKNLFFSTLILQSRYQSPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKDAIKRSSTGFITAKSIADWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRLTDTALFLDQQESNIHQIHENDTVERLCRVLMMMKTRAIPLQSLRPLEWDLGLPCGFERSLIPRYPDHFRLVKASNGDWCLRLMEWREEFAVSALQRGNESSELGDTYRQFKRGHTTLAFPMSFPRGYGAQKKVKAWMEEFQKLPYISPYESCRQIDPKSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREEMNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTCLREKFYHVMKTGLLYRGKGAELLAKEGILLNNTAEVVEDGLDIESDETGDDECFVDNNSQAEESDLD 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5405723 5406994 - CcPI632755_08g002930.1 Cco08g0293 184767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0293 423 MobiDBLite consensus disorder prediction 401 423 - -
Cco08g0293 423 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 29 414 IPR045040 GO:0003723(InterPro)
Cco08g0293 423 Pfam Plant organelle RNA recognition domain 37 368 IPR021099 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0293 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0293 Cco-Chr8:5405723 Cco08g0549 Cco-Chr8:14174664 2.50E-73 dispersed
Cco08g0293 Cco-Chr8:5405723 Cco10g0650 Cco-Chr10:8978046 1.90E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1388 . . . . . . . . . Cmo15g00606 . . . . . . Cpe13g00681 Bhi04g01780 . . . . . . Cla08g00221 . Cec08g0008 Cco08g0293 . . Cre08g0194 . . . . . . . Cme03g00320 . . . . . . . . . . . . . . Car15g00555 . . . . . . . . . Cla09g00894 Cam09g0945 Cec09g0948 Cco09g0952 . . Cre09g0914 Lsi08g00552 . Chy03g00307 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007385 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 4 1 36