Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0341 | ATGGCCGCCCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAAGCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGGCTCCGCCTCAGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACAGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCTGCCTCCAACAACACGCTGGAAGCCACAAGCGGCGACGTGGAGAAGATTGAGAGCGTGTTCGCGGATCCTCAGGTGTTCGATTTCTTCGCGAACCCAACGATTAGCACCGAGAAGAAACTGGCAGTGGTGGATGAAATCGCTTCGTCCTCATCTCTACAGCCGCATTCAGCGAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTTGAATTGGTGTACAACAAGATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATAAAGACGCAGATCGACCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCGAAACTTATTGATTTGAGCGTCAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGA | 723 | 54.77 | MAALHQTAASLQAKLLPSVRFSRTTPVNLSFSATFPSRGLRLSHHRSHGGAKMSATAAGSYAAALAEVAASNNTLEATSGDVEKIESVFADPQVFDFFANPTISTEKKLAVVDEIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6719707 | 6720429 | - | CcPI632755_08g003410.1 | Cco08g0341 | 184815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0341 | 240 | ProSitePatterns | ATP synthase delta (OSCP) subunit signature. | 190 | 209 | IPR020781 | GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro) | |
Cco08g0341 | 240 | NCBIfam | ATP synthase F1 subunit delta | 58 | 231 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco08g0341 | 240 | Gene3D | - | 57 | 149 | IPR026015 | - | |
Cco08g0341 | 240 | SUPERFAMILY | N-terminal domain of the delta subunit of the F1F0-ATP synthase | 54 | 157 | IPR026015 | - | |
Cco08g0341 | 240 | Pfam | ATP synthase delta (OSCP) subunit | 58 | 231 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco08g0341 | 240 | PANTHER | ATP SYNTHASE DELTA CHAIN | 28 | 231 | IPR000711 | GO:0009535(PANTHER)|GO:0009772(PANTHER)|GO:0009773(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro) | |
Cco08g0341 | 240 | Hamap | ATP synthase subunit delta [atpD]. | 53 | 233 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco08g0341 | 240 | PRINTS | ATP synthase delta subunit signature | 206 | 224 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco08g0341 | 240 | PRINTS | ATP synthase delta subunit signature | 188 | 203 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco08g0341 | 240 | PRINTS | ATP synthase delta subunit signature | 137 | 151 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco08g0341 | 240 | PRINTS | ATP synthase delta subunit signature | 57 | 76 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
Cco08g0341 | 240 | PRINTS | ATP synthase delta subunit signature | 126 | 137 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g0341 | Cco-Chr8:6719707 | Cco09g0400 | Cco-Chr9:3641064 | 3.60E-08 | dispersed | |
Cco08g0341 | Cco-Chr8:6719707 | Cco10g1229 | Cco-Chr10:25019161 | 1.40E-09 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0341 | K02113 | - | csv:101211740 | 400.593 |