Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0341 ATGGCCGCCCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAAGCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGGCTCCGCCTCAGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACAGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCTGCCTCCAACAACACGCTGGAAGCCACAAGCGGCGACGTGGAGAAGATTGAGAGCGTGTTCGCGGATCCTCAGGTGTTCGATTTCTTCGCGAACCCAACGATTAGCACCGAGAAGAAACTGGCAGTGGTGGATGAAATCGCTTCGTCCTCATCTCTACAGCCGCATTCAGCGAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTTGAATTGGTGTACAACAAGATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATAAAGACGCAGATCGACCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCGAAACTTATTGATTTGAGCGTCAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGA 723 54.77 MAALHQTAASLQAKLLPSVRFSRTTPVNLSFSATFPSRGLRLSHHRSHGGAKMSATAAGSYAAALAEVAASNNTLEATSGDVEKIESVFADPQVFDFFANPTISTEKKLAVVDEIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6719707 6720429 - CcPI632755_08g003410.1 Cco08g0341 184815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0341 240 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 190 209 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Cco08g0341 240 NCBIfam ATP synthase F1 subunit delta 58 231 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco08g0341 240 Gene3D - 57 149 IPR026015 -
Cco08g0341 240 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 157 IPR026015 -
Cco08g0341 240 Pfam ATP synthase delta (OSCP) subunit 58 231 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco08g0341 240 PANTHER ATP SYNTHASE DELTA CHAIN 28 231 IPR000711 GO:0009535(PANTHER)|GO:0009772(PANTHER)|GO:0009773(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cco08g0341 240 Hamap ATP synthase subunit delta [atpD]. 53 233 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco08g0341 240 PRINTS ATP synthase delta subunit signature 206 224 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco08g0341 240 PRINTS ATP synthase delta subunit signature 188 203 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco08g0341 240 PRINTS ATP synthase delta subunit signature 137 151 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco08g0341 240 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cco08g0341 240 PRINTS ATP synthase delta subunit signature 126 137 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0341 Cco-Chr8:6719707 Cco09g0400 Cco-Chr9:3641064 3.60E-08 dispersed
Cco08g0341 Cco-Chr8:6719707 Cco10g1229 Cco-Chr10:25019161 1.40E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0341 K02113 - csv:101211740 400.593