Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0349 ATGAAGCAATTACAATTATTGTACCCCGAGAGACCTATGAACATGCCAGGTTCACATGAGGAGGAAGATGATCATGGTGAGGTCTTTCTTGATGAAGCTGACATAATCAATGAAATTTCGGTTGATGAGGAAGATCTTCCTGATGCTGTTGATGAAGAGGGCTCCGATGATGAATATTTTGATGAGGCTGATGATTCCGTTCATACTTTTACTGGCCATACTGGTGAGGTTTACACAGTGGTCTGTAGTCCAATAGATGCCTCATTAGTTGCGACAGGGGGTGGAGATGACAAAGGATTTATGTGGAAGATTGGCCAAGGAGATTTTGCACAGGAGCTTAGTGGTCACAAGGATTCCGTGTCTAGCTTAGCATTTAGTGCAGATGGAAAACTACTTGCATCAGGGAGTTTTGATGGGCTTATCCAAATTTGGGATACTTCATCCGGGAATCTTAAATGCGCACTTGAAGGCCCTGGAGGGGGAATTGAGTGGGTAAGGTGGCATCCAAGAGGACATCTGGTTTTGGCTGGTTCTGAAGATTCCACCGCTTGGATGTGGAATGCTGATAGAGGCGTCTATCTTAATATATTTTCTGGTCACGGGGCTAGTGTTACATGCGGTGACTTTACTCCGGATGGTAAAATGATATGCACGGGTTCTGATGATGCAACGATGAGGATATGGAATCCAAGAAGTGGTGAAAATATTCATGTCGTGAGAGGTCATCCCTATCATACCGAAGGATTGACTTCTCTAGCACTCACTTCTGATTCAACCCTTGCTCTTACTGGTTCAAAAGATGGTTCTGTTCATATTGTGAATATAGCAACTGGAAAGGTAGTGAATTCTCTGGTTTCCCATTCAGATTCAATTGAATGCATCGGTCTAGCACCAAGCTCCCCTTGGGCTGCAACTGGAGGAATGGATCAGAAGCTCATCATTTGGGATCTTCGACAATCAACGCCACGCAGTACATGCGAGCACGAGGATGGAGTAACATGTCTTACTTGGATTGGGACGTCGAGATACCTTGCAACCGGATGTGTCGATGGTCGAGTACGAATGTGGGATAGCCTCTCCGGAGAATGTGTTAGAACCTTCACCGGCCACTCCGATGCCATCCAATCTCTCGCGGTGTCTGCCAACAATGAGTACCTTGTTTCTGTTGCTCTTGATAATACAGCTCGGATTTTTGAGATTGCAGAGTATCATTGA 1215 45.27 MKQLQLLYPERPMNMPGSHEEEDDHGEVFLDEADIINEISVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVYTVVCSPIDASLVATGGGDDKGFMWKIGQGDFAQELSGHKDSVSSLAFSADGKLLASGSFDGLIQIWDTSSGNLKCALEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGVYLNIFSGHGASVTCGDFTPDGKMICTGSDDATMRIWNPRSGENIHVVRGHPYHTEGLTSLALTSDSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEYH 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6908565 6923669 + CcPI632755_08g003490.1 Cco08g0349 184823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 238 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 155 196 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 16 402 IPR051179 -
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 113 150 - -
Cco08g0349 404 Pfam WD domain, G-beta repeat 66 102 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 Pfam WD domain, G-beta repeat 324 357 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 Pfam WD domain, G-beta repeat 361 398 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 Pfam WD domain, G-beta repeat 278 316 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 Pfam WD domain, G-beta repeat 153 187 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 Pfam WD domain, G-beta repeat 193 229 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 Pfam WD domain, G-beta repeat 234 272 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 Pfam WD domain, G-beta repeat 110 145 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 70 112 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 64 391 IPR011047 -
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 325 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 197 234 - -
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 367 404 - -
Cco08g0349 404 CDD WD40 111 399 - -
Cco08g0349 404 ProSitePatterns Trp-Asp (WD) repeats signature. 132 146 IPR019775 -
Cco08g0349 404 MobiDBLite consensus disorder prediction 1 24 - -
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 113 154 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 Gene3D - 63 402 IPR015943 GO:0005515(InterPro)
Cco08g0349 404 SMART WD40_4 106 145 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 SMART WD40_4 319 357 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 SMART WD40_4 190 229 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 SMART WD40_4 360 399 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 SMART WD40_4 277 316 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 SMART WD40_4 232 274 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 SMART WD40_4 63 103 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 SMART WD40_4 148 187 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 FunFam Angio-associated migratory cell protein-like protein 63 402 - -
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 318 - -
Cco08g0349 404 ProSitePatterns Trp-Asp (WD) repeats signature. 303 317 IPR019775 -
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 283 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 PRINTS G protein beta WD-40 repeat signature 216 230 IPR020472 -
Cco08g0349 404 PRINTS G protein beta WD-40 repeat signature 344 358 IPR020472 -
Cco08g0349 404 PRINTS G protein beta WD-40 repeat signature 132 146 IPR020472 -
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 404 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 366 IPR001680 GO:0005515(InterPro)
Cco08g0349 404 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0349 K24725 - - csv:101211245 771.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0347 Cco-Chr8:6895190 Cco08g0349 Cco-Chr8:6908565 2.40E-67 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1306 . . . . . . . . . . . Cma09g01283 . . . . . . . . . . . . Cla08g00264 Cam08g0704 . Cco08g0349 Clacu08g0411 . Cre08g0236 . . . . . . . . . . . Bda13g01432 . . . . . . Cmo09g01240 . . . Car09g01096 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004733 3 1 1 2 1 1 2 2 0 1 1 1 2 1 1 3 1 1 2 1 1 2 1 1 1 1 1 3 1 2 42