Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0364 ATGGCGAATCGCGTATACCAAGTCTGGAAAGGAAGTAATAAGTTTATCCTTGGTGGGAGACTAATATTTGGGCCTGATGCTAGGTCATTGCTTGTCACAATATTGCTGATTACAGTTCCAGTTATCCTCTTTTGTGCATTTGTTGCAAGACATCTTCGACACAAGTTTTCATCATATAATGCAGGATATGCCATTCTGGTGGTCGCCATTGTTTTTACTATATATGTACTGGTACTTCTTTTCCTTACTTCAGCCCGGGACCCAGGAATAATTCCTCGCAATTCACATCCTCCAGAGGATGAAATCCGTTTTGACTCTTCAGTATCAGTCGATGTTGGGGGAAGGCAAACTCCAAGTCTCCAGTTTCCTCGGACAAAAGAAGTTATTGTAAATGGGCTTCCAGTAAGAGTAAAGTATTGTGACACATGTATGCTATATCGTCCTCCTCGTTGCTCCCATTGCTCAATTTGCAACAATTGTGTGGAACACTTTGATCATCACTGCCCTTGGGTGGGTCAATGTATTGGACTGCGGAACTACCGTTACTTCTTTATGTTTGTATCTTCTTCAACACTTCTTTGCATGTACGTGTTTGCAATGTCAGCAATTTATATCAAGGTGCTGATGGATCAATATGAGAGCACTGTTTGGAAGGCAATGAAAGAATCACCTGCATCAGTCATATTAATGGCCTACTGCTTTGTCTCCCTTTGGTTTGTTGGTGGTCTAACTGGCTTCCATTTGTATCTTATTGGCACAAATCAGACAACCTATGAAAATTTCCGGTACAGAGCTGATAATAGGATCAATGTTTTCAACCGGGGTTGTGCGAATAATTTTCTTGAAGTATTTTGCTCGAAAGTAAAGCCATCAAGGAACAATTTTCGAGCTTTCGTCCAAGAGGAGGTGCCAAGGCCTCAAGTTCTTCCTCAGTTGCCCCGTGCTGCAGCCGATGATTTGGCTGCACATCCACGTTCAAAAGTCGAAGATGATCTTGATATAGGTGAAGACTTGTTGAAAATCTCCCAGCGTCGGAACATCGATGAAATCTCAGAGGACATACGTAGCAGAGGGAGTAATGGGCCGCCTCTTAGTGCTCCAGAGACGGACCCTGTTTTGGAATCTGATCATCAAGCACCAACAATTCGATCAGATCGGCATTCTAGTTGGGGAAGAAGAAGCGGTAGCTGGGAAATTGCAACCGAGGTCTTTGCCAACTCGAACGTGACTGAAAGCCGAAGTTACGTAACATCAAAGGAGGCATTTCCGTGA 1272 43.47 MANRVYQVWKGSNKFILGGRLIFGPDARSLLVTILLITVPVILFCAFVARHLRHKFSSYNAGYAILVVAIVFTIYVLVLLFLTSARDPGIIPRNSHPPEDEIRFDSSVSVDVGGRQTPSLQFPRTKEVIVNGLPVRVKYCDTCMLYRPPRCSHCSICNNCVEHFDHHCPWVGQCIGLRNYRYFFMFVSSSTLLCMYVFAMSAIYIKVLMDQYESTVWKAMKESPASVILMAYCFVSLWFVGGLTGFHLYLIGTNQTTYENFRYRADNRINVFNRGCANNFLEVFCSKVKPSRNNFRAFVQEEVPRPQVLPQLPRAAADDLAAHPRSKVEDDLDIGEDLLKISQRRNIDEISEDIRSRGSNGPPLSAPETDPVLESDHQAPTIRSDRHSSWGRRSGSWEIATEVFANSNVTESRSYVTSKEAFP 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7287126 7293981 - CcPI632755_08g003640.1 Cco08g0364 184838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0364 423 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 39 314 - GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0006612(PANTHER)|GO:0018230(PANTHER)|GO:0019706(PANTHER)
Cco08g0364 423 ProSiteProfiles DHHC domain profile. 138 188 - -
Cco08g0364 423 MobiDBLite consensus disorder prediction 350 393 - -
Cco08g0364 423 Pfam DHHC palmitoyltransferase 138 262 IPR001594 GO:0016409(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0364 K16675 - - csv:101210342 838.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0364 Cco-Chr8:7287126 Cco08g0847 Cco-Chr8:20328017 3.80E-199 dispersed
Cco08g0364 Cco-Chr8:7287126 Cco01g0374 Cco-Chr1:3750967 3.30E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1350 . . . . . . . . . Cmo15g00592 . . . . . . Cpe13g00691 Bhi04g02172 . . . . . . Cla08g00276 Cam08g0717 Cec08g0271 Cco08g0364 Clacu08g0427 . Cre08g0252 Cone4ag1482 Cone7ag1462 . . . . . Cme03g00914 Blo17g00138 Blo18g00149 . Bda13g01422 Bpe02g01102 Bpe14g00435 Bma01g01434 Bma02g00157 . . . . . . Car15g00544 . . . . . . . . . . . . . . . . Lsi08g00248 . Chy03g00271 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002682 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 3 3 2 58