Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0388 ATGGAGCAGTTCAAGGTTTTGGCTCTGGGTTTCGTGTCTTTGATCTTGCTGGTTCCTCCACTATGGCTCGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTCGTCAATCCCTGTACATGGTTTCATGTTACATGCAATAATGATAATAGTGTCATAAGAGTTGATCTTGGAAATGCAGCTTTATCAGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCAAATGATCTGGGGAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACAGATTTTCGGGTCCGATTCCAGACACATTGGGCAAGCTGTCAAAACTACGATTTCTCCGACTGAACAACAACAGCTTATCAGGCCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTGTTGGATCTATCAAATAACCATCTCTCAGGCCCAGTTCCAGATAACGGTTCCTTCTCCTTATTCACCCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGCCGTCCTTGCCCGGGATCTCCTCCATTTTCTCCTCCTCCACCATTTGTTCCACCGCCACCTATATCTTCACCAGGAGGGAATAGTGCTACTGGAGCTATTGCTGGTGGAGTTGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATCGCGTTTGCATGGTGGCGTCGTAGGAAACCCCAAGAAGTTTTCTTTGATGTTCCTGCCGAAGAGGATCCTGAAGTGCATCTGGGACAGCTTAAAAGATTTTCACTAAGAGAACTACAAGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGACGGTTCTTTAGTAGCTGTAAAAAGACTTAAGGAAGAACGTACACCAGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGGAACCTGCTACGGCTACGTGGGTTTTGCATGACGCCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGCAGTGTTGCGTCTTGCTTAAGAGAACGACCACCATCCCAACCACCTCTTGATTGGAGAACGAGAAAGCGAATTGCATTGGGATCTGCGAGAGGGCTGTCTTATTTGCATGATCACTGTGATCCGAAGATTATTCATCGTGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCTGTTGTAGGGGACTTTGGGTTGGCCAAACTCATGGATTACAAAGATACTCATGTCACCACTGCAGTACGTGGTACGATTGGACATATAGCTCCTGAGTACCTTTCCACTGGGAAATCTTCTGAGAAAACAGATGTTTTCGGGTATGGTATCATGCTTTTAGAGCTTATCACTGGTCAAAGGGCTTTTGATTTGGCTCGACTTGCCAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTCTTGAAAGAGAAGAAGTTAGAAATGCTGGTTGACCCTGATCTTCAGAATAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAAGTTGCCTTACTCTGCACACAAGGCTCCCCAATGGACCGACCGAAGATGTCCGAGGTGGTGAGAATGCTTGAAGGTGATGGATTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAGATCCTTCGGCAAGAAATCGATCTATCGCCCCATCCAAATTCCGATTGGATTGTTGATTCAACTGAAAATCTACATGCAGTTGAGCTGTCGGGTCCAAGATGA 1878 44.89 MEQFKVLALGFVSLILLVPPLWLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPNDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8528772 8538124 - CcPI632755_08g003880.1 Cco08g0388 184862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0388 625 CDD STK_BAK1_like 308 579 - -
Cco08g0388 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Cco08g0388 625 SMART serkin_6 302 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0388 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0388 625 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
Cco08g0388 625 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Cco08g0388 625 Pfam Leucine Rich Repeat 166 184 IPR001611 GO:0005515(InterPro)
Cco08g0388 625 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Cco08g0388 625 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515(InterPro)
Cco08g0388 625 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cco08g0388 625 SUPERFAMILY Protein kinase-like (PK-like) 281 577 IPR011009 -
Cco08g0388 625 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g0388 625 Pfam Protein tyrosine and serine/threonine kinase 305 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g0388 625 SUPERFAMILY L domain-like 30 193 - -
Cco08g0388 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 625 - -
Cco08g0388 625 Gene3D Ribonuclease Inhibitor 25 212 IPR032675 -
Cco08g0388 625 FunFam Somatic embryogenesis receptor-like kinase 1 379 596 - -
Cco08g0388 625 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cco08g0388 625 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
Cco08g0388 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0179 Cco-Chr6:1858421 Cco08g0388 Cco-Chr8:8528772 2.30E-30 dispersed
Cco07g1002 Cco-Chr7:23021312 Cco08g0388 Cco-Chr8:8528772 1.30E-243 dispersed
Cco07g1803 Cco-Chr7:32168377 Cco08g0388 Cco-Chr8:8528772 5.80E-124 dispersed
Cco08g0388 Cco-Chr8:8528772 Cco10g0883 Cco-Chr10:18529458 2.70E-225 dispersed
Cco08g0388 Cco-Chr8:8528772 Cco07g1802 Cco-Chr7:32152248 5.10E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87014 PF00069 Pkinase 9.50E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0388 K13418 - csv:101208695 1137.87