Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0388 | ATGGAGCAGTTCAAGGTTTTGGCTCTGGGTTTCGTGTCTTTGATCTTGCTGGTTCCTCCACTATGGCTCGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTCGTCAATCCCTGTACATGGTTTCATGTTACATGCAATAATGATAATAGTGTCATAAGAGTTGATCTTGGAAATGCAGCTTTATCAGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCAAATGATCTGGGGAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACAGATTTTCGGGTCCGATTCCAGACACATTGGGCAAGCTGTCAAAACTACGATTTCTCCGACTGAACAACAACAGCTTATCAGGCCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTGTTGGATCTATCAAATAACCATCTCTCAGGCCCAGTTCCAGATAACGGTTCCTTCTCCTTATTCACCCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGCCGTCCTTGCCCGGGATCTCCTCCATTTTCTCCTCCTCCACCATTTGTTCCACCGCCACCTATATCTTCACCAGGAGGGAATAGTGCTACTGGAGCTATTGCTGGTGGAGTTGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATCGCGTTTGCATGGTGGCGTCGTAGGAAACCCCAAGAAGTTTTCTTTGATGTTCCTGCCGAAGAGGATCCTGAAGTGCATCTGGGACAGCTTAAAAGATTTTCACTAAGAGAACTACAAGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGACGGTTCTTTAGTAGCTGTAAAAAGACTTAAGGAAGAACGTACACCAGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGGAACCTGCTACGGCTACGTGGGTTTTGCATGACGCCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGCAGTGTTGCGTCTTGCTTAAGAGAACGACCACCATCCCAACCACCTCTTGATTGGAGAACGAGAAAGCGAATTGCATTGGGATCTGCGAGAGGGCTGTCTTATTTGCATGATCACTGTGATCCGAAGATTATTCATCGTGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCTGTTGTAGGGGACTTTGGGTTGGCCAAACTCATGGATTACAAAGATACTCATGTCACCACTGCAGTACGTGGTACGATTGGACATATAGCTCCTGAGTACCTTTCCACTGGGAAATCTTCTGAGAAAACAGATGTTTTCGGGTATGGTATCATGCTTTTAGAGCTTATCACTGGTCAAAGGGCTTTTGATTTGGCTCGACTTGCCAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTCTTGAAAGAGAAGAAGTTAGAAATGCTGGTTGACCCTGATCTTCAGAATAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAAGTTGCCTTACTCTGCACACAAGGCTCCCCAATGGACCGACCGAAGATGTCCGAGGTGGTGAGAATGCTTGAAGGTGATGGATTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAGATCCTTCGGCAAGAAATCGATCTATCGCCCCATCCAAATTCCGATTGGATTGTTGATTCAACTGAAAATCTACATGCAGTTGAGCTGTCGGGTCCAAGATGA | 1878 | 44.89 | MEQFKVLALGFVSLILLVPPLWLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPNDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR | 625 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 8528772 | 8538124 | - | CcPI632755_08g003880.1 | Cco08g0388 | 184862 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0388 | 625 | CDD | STK_BAK1_like | 308 | 579 | - | - | |
Cco08g0388 | 625 | Gene3D | Phosphorylase Kinase; domain 1 | 271 | 378 | - | - | |
Cco08g0388 | 625 | SMART | serkin_6 | 302 | 576 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g0388 | 625 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 425 | 437 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco08g0388 | 625 | Gene3D | Transferase(Phosphotransferase) domain 1 | 379 | 596 | - | - | |
Cco08g0388 | 625 | FunFam | Somatic embryogenesis receptor kinase 1 | 271 | 378 | - | - | |
Cco08g0388 | 625 | Pfam | Leucine Rich Repeat | 166 | 184 | IPR001611 | GO:0005515(InterPro) | |
Cco08g0388 | 625 | Pfam | Leucine Rich Repeat | 118 | 140 | IPR001611 | GO:0005515(InterPro) | |
Cco08g0388 | 625 | Pfam | Leucine Rich Repeat | 94 | 116 | IPR001611 | GO:0005515(InterPro) | |
Cco08g0388 | 625 | Pfam | Leucine Rich Repeat | 142 | 163 | IPR001611 | GO:0005515(InterPro) | |
Cco08g0388 | 625 | SUPERFAMILY | Protein kinase-like (PK-like) | 281 | 577 | IPR011009 | - | |
Cco08g0388 | 625 | ProSiteProfiles | Protein kinase domain profile. | 302 | 589 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g0388 | 625 | Pfam | Protein tyrosine and serine/threonine kinase | 305 | 576 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco08g0388 | 625 | SUPERFAMILY | L domain-like | 30 | 193 | - | - | |
Cco08g0388 | 625 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 11 | 625 | - | - | |
Cco08g0388 | 625 | Gene3D | Ribonuclease Inhibitor | 25 | 212 | IPR032675 | - | |
Cco08g0388 | 625 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 379 | 596 | - | - | |
Cco08g0388 | 625 | Pfam | Leucine rich repeat N-terminal domain | 27 | 66 | IPR013210 | - | |
Cco08g0388 | 625 | FunFam | Somatic embryogenesis receptor kinase 1 | 25 | 212 | - | - | |
Cco08g0388 | 625 | ProSitePatterns | Protein kinases ATP-binding region signature. | 308 | 330 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0179 | Cco-Chr6:1858421 | Cco08g0388 | Cco-Chr8:8528772 | 2.30E-30 | dispersed | |
Cco07g1002 | Cco-Chr7:23021312 | Cco08g0388 | Cco-Chr8:8528772 | 1.30E-243 | dispersed | |
Cco07g1803 | Cco-Chr7:32168377 | Cco08g0388 | Cco-Chr8:8528772 | 5.80E-124 | dispersed | |
Cco08g0388 | Cco-Chr8:8528772 | Cco10g0883 | Cco-Chr10:18529458 | 2.70E-225 | dispersed | |
Cco08g0388 | Cco-Chr8:8528772 | Cco07g1802 | Cco-Chr7:32152248 | 5.10E-139 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87014 | PF00069 | Pkinase | 9.50E-45 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0388 | K13418 | - | csv:101208695 | 1137.87 |