Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0421 | ATGGTACCTTCGGGACCATCTACTCCCATTGGTGGTGCGCAGTCTGTTTCACCGTCGCTTTTGAGATCAAATTCTGGAATGATGGGAGCACAAGGGGGGCTGCCTTCTCAGTCAGCTTTTCCTTCTCTTGTATCCCCACGGACACAGTTTAGCAGTATGAATATGCTTGGTAATACACCCAGTATGTCTTCTCTCCTAAATCAGTCATTTGGTAATGGAGTTCCGAATTCTGGGCCCTCAGGCCTTGGAAACAGCCAACGAGGAGTTATGGACCCTGGTTCTGAGTCAGATCCATTTTCACTTGTTGGCAATGGTGTGAACTTCAACAATACCCCATCGTCATTGGTGACATCAAATACAGCAAACCCTGGTTCATCTAGTCAAGTTTCAGGGCAGCAATTTTCAAATCATTCTAGCAGCCAAATAATACCCAATCAACAGCAACCACAGCAAATTGAACCCCAGAACTTCCAACATGGTCAGCATTCAATGCAACAGTTCGCTACATCTAATAACATACAGCAGGCACAACAGCAGCAACAACAACAATTCCAACGAGGAAGCTTGTGCGGTGTTGGACCCATCAAGTTAGAGCCTCAAATGAATAATAACGATCTTCAAGCACAGCAACTACAGCAGCAGCAGCAGTTGCAGTCAATGAGGAATCTTGGTCCTGTGAAACTGGAACCACAACAACTTCAATCAATGAGAAACATGGGTCCTGTGAAATTGGAACCTCAACAGTCTGATCAGTCATTGTTTCTACAGCAGCAACATCAACATCAACAGCAACAGCAACAGCAACAGCAACAACAGCAGCTACTCAGTATGTCTAGGCAGTCCTCTCAGGCTGCTGCTGCACAGATTAATCTTTTGCAACAACAAAGACTCTTGCAATTTCAACACCAACAGCAACTCCTGAAGGCTATACCTCAGCAAAGGCCGCATTTGCCTCAACAATTTCAACAACAAAATTTGCCATTGAGATCCCCTGTAAAATCAGTTTATGAACCTGGCATGTGTGCTCGACGTTTAACAAGTTATATGTGCCAACAACAGCAAAGGCCTGAAGACAACAATATTGAGTTCTGGAGGAAATTTGTTGCGGATTACTTTGCTCCCCATGCCAAAAAGAAATGGTGTGTTTCCATGTATGGAAATGGTCGCCAAACAACTGGTGTATTTCCACAGGATGTTTGGCATTGTGAAATATGCAACCGCAAGCCTGGTCGAGGTTTTGAAGCGACTTTTGAAGTTCTCCCAAGGCTGTTCAAAATCAAGTATGAGAGTGGAACGCTCGAAGAGCTTCTTTATGTTGATATGCCCCGCGAATATCATAATTCATCTGGACAAATTGTCCTTGATTACGCAAAAGCAATACAAGAAAGCGTATTTGAGCAACTTCGTGTTGTTCGTGATGGGCAACTTCGGATAGTTTTTTCTCCAGACTTAAAGATATGTTCTTGGGAATTTTGTGCTCGACGTCATGAAGAGCTTATTCCTCGAAGGTTGCTAATACCTCAGGTTAGTCAGCTGGGTGCAGCTGCTCAGAAGTATCAGACTGCAATTCAAAATGCATCATCTAACTTGCCTACTCCAGAGTTACAAAATAATTGCAACATGTTTGTGGGCTCAGCTAGACAATTGGCCAAGGCATTGGAAGTGCCATTAGTAAATGACTTGGGATATACGAAGAGATACGTTCGGTGCCTTCAGATATCAGAAGTCGTCAATAGTATGAAGGACTTGATAGATTACAGCCAAGAAACTACGACTGGGCCGATTGAAAGTTTGGCAAAGTTTCCGCGGAAGACGAATGCTTCACCAGGCTTCCACAGCCAAGCTCAAAATATGGAGCAACAATTACCTCAGCCGCAGCAAACAATTGATCAAAACGCAAATGGCGACCAAAGCTCTGCTCAGGCTGCTTCGATGCAGCTTGCTGCTAACAATGGTGTTCCAAGTGCAAATAACGCTGGTAATCCAGCGTCAACCTCATCCCCTGCCAGTACCATCGTTGGGTTACTCCACCAGAACTCCATGAACTCCAGACAGCAGAACTCTATCAACAGCGCTGGCAGCCCTTATGCCGGAAATTCTGCGCAAATATCGTCTCCAGGTTCCTCCACGATTGCTCAGGCACAAGCTAACTCCTCGTTCCAATCGCCTACATTGTCCTCACCTAACAATCACCCACAATCATCAATTGGCACTGCAACAACTACTAATCACATGAGTGCCACTAATTCTCCGGCAAATGTTCCCTTGCAACAGCCAACACAATCCTCAGATGCTGATCAAAACGATTCCCAAAGTTCCGTACAAAAGATTATTCAGGAATACATGATGTCGAATCATCTAAACGGGATGAACACAATGACTGGTGTATCCTCTATAGGAGATGAGGCGAAAACTGTTAACGGGATGTTGCCAGGAAACAACATTATGAGTCTCAATGGACGGAATGGACTCATCGGGACTGGAACTGCTAATGGCGTTCCTGGGATCAGGAATGCGGGATATGGCTCAATGAATGGGGGACTTGCTCAGGCTTCTATGGTCAATGGAATGAAGTCAGCAATGGGAAATAACTCGATTTCGAACGGGAGAATCGGGATGGCGTCATTGGCTCGAGGACAGAGCATAAATCATCAAGATTTGGGGGACCAGCTTCTTAATGGACTTGGAGCTGTGAATGGATTTAATAATCTTCAATTCGATTATTGA | 2727 | 44.77 | MVPSGPSTPIGGAQSVSPSLLRSNSGMMGAQGGLPSQSAFPSLVSPRTQFSSMNMLGNTPSMSSLLNQSFGNGVPNSGPSGLGNSQRGVMDPGSESDPFSLVGNGVNFNNTPSSLVTSNTANPGSSSQVSGQQFSNHSSSQIIPNQQQPQQIEPQNFQHGQHSMQQFATSNNIQQAQQQQQQQFQRGSLCGVGPIKLEPQMNNNDLQAQQLQQQQQLQSMRNLGPVKLEPQQLQSMRNMGPVKLEPQQSDQSLFLQQQHQHQQQQQQQQQQQQLLSMSRQSSQAAAAQINLLQQQRLLQFQHQQQLLKAIPQQRPHLPQQFQQQNLPLRSPVKSVYEPGMCARRLTSYMCQQQQRPEDNNIEFWRKFVADYFAPHAKKKWCVSMYGNGRQTTGVFPQDVWHCEICNRKPGRGFEATFEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLPTPELQNNCNMFVGSARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSQETTTGPIESLAKFPRKTNASPGFHSQAQNMEQQLPQPQQTIDQNANGDQSSAQAASMQLAANNGVPSANNAGNPASTSSPASTIVGLLHQNSMNSRQQNSINSAGSPYAGNSAQISSPGSSTIAQAQANSSFQSPTLSSPNNHPQSSIGTATTTNHMSATNSPANVPLQQPTQSSDADQNDSQSSVQKIIQEYMMSNHLNGMNTMTGVSSIGDEAKTVNGMLPGNNIMSLNGRNGLIGTGTANGVPGIRNAGYGSMNGGLAQASMVNGMKSAMGNNSISNGRIGMASLARGQSINHQDLGDQLLNGLGAVNGFNNLQFDY | 908 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 9877436 | 9888255 | + | CcPI632755_08g004210.1 | Cco08g0421 | 184895 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0421 | 908 | MobiDBLite | consensus disorder prediction | 100 | 182 | - | - | |
Cco08g0421 | 908 | Coils | Coil | 203 | 223 | - | - | |
Cco08g0421 | 908 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 231 | 904 | IPR029005 | GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER) | |
Cco08g0421 | 908 | MobiDBLite | consensus disorder prediction | 1 | 182 | - | - | |
Cco08g0421 | 908 | MobiDBLite | consensus disorder prediction | 243 | 274 | - | - | |
Cco08g0421 | 908 | MobiDBLite | consensus disorder prediction | 681 | 773 | - | - | |
Cco08g0421 | 908 | MobiDBLite | consensus disorder prediction | 8 | 91 | - | - | |
Cco08g0421 | 908 | MobiDBLite | consensus disorder prediction | 616 | 644 | - | - | |
Cco08g0421 | 908 | Pfam | LIM-domain binding protein | 344 | 598 | IPR029005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0946 | Cco-Chr5:8290762 | Cco08g0421 | Cco-Chr8:9877436 | 2.60E-93 | dispersed | |
Cco08g0421 | Cco-Chr8:9877436 | Cco08g0780 | Cco-Chr8:19601603 | 2.20E-276 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0421 | - | - | - | 0.0 |