Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0421 ATGGTACCTTCGGGACCATCTACTCCCATTGGTGGTGCGCAGTCTGTTTCACCGTCGCTTTTGAGATCAAATTCTGGAATGATGGGAGCACAAGGGGGGCTGCCTTCTCAGTCAGCTTTTCCTTCTCTTGTATCCCCACGGACACAGTTTAGCAGTATGAATATGCTTGGTAATACACCCAGTATGTCTTCTCTCCTAAATCAGTCATTTGGTAATGGAGTTCCGAATTCTGGGCCCTCAGGCCTTGGAAACAGCCAACGAGGAGTTATGGACCCTGGTTCTGAGTCAGATCCATTTTCACTTGTTGGCAATGGTGTGAACTTCAACAATACCCCATCGTCATTGGTGACATCAAATACAGCAAACCCTGGTTCATCTAGTCAAGTTTCAGGGCAGCAATTTTCAAATCATTCTAGCAGCCAAATAATACCCAATCAACAGCAACCACAGCAAATTGAACCCCAGAACTTCCAACATGGTCAGCATTCAATGCAACAGTTCGCTACATCTAATAACATACAGCAGGCACAACAGCAGCAACAACAACAATTCCAACGAGGAAGCTTGTGCGGTGTTGGACCCATCAAGTTAGAGCCTCAAATGAATAATAACGATCTTCAAGCACAGCAACTACAGCAGCAGCAGCAGTTGCAGTCAATGAGGAATCTTGGTCCTGTGAAACTGGAACCACAACAACTTCAATCAATGAGAAACATGGGTCCTGTGAAATTGGAACCTCAACAGTCTGATCAGTCATTGTTTCTACAGCAGCAACATCAACATCAACAGCAACAGCAACAGCAACAGCAACAACAGCAGCTACTCAGTATGTCTAGGCAGTCCTCTCAGGCTGCTGCTGCACAGATTAATCTTTTGCAACAACAAAGACTCTTGCAATTTCAACACCAACAGCAACTCCTGAAGGCTATACCTCAGCAAAGGCCGCATTTGCCTCAACAATTTCAACAACAAAATTTGCCATTGAGATCCCCTGTAAAATCAGTTTATGAACCTGGCATGTGTGCTCGACGTTTAACAAGTTATATGTGCCAACAACAGCAAAGGCCTGAAGACAACAATATTGAGTTCTGGAGGAAATTTGTTGCGGATTACTTTGCTCCCCATGCCAAAAAGAAATGGTGTGTTTCCATGTATGGAAATGGTCGCCAAACAACTGGTGTATTTCCACAGGATGTTTGGCATTGTGAAATATGCAACCGCAAGCCTGGTCGAGGTTTTGAAGCGACTTTTGAAGTTCTCCCAAGGCTGTTCAAAATCAAGTATGAGAGTGGAACGCTCGAAGAGCTTCTTTATGTTGATATGCCCCGCGAATATCATAATTCATCTGGACAAATTGTCCTTGATTACGCAAAAGCAATACAAGAAAGCGTATTTGAGCAACTTCGTGTTGTTCGTGATGGGCAACTTCGGATAGTTTTTTCTCCAGACTTAAAGATATGTTCTTGGGAATTTTGTGCTCGACGTCATGAAGAGCTTATTCCTCGAAGGTTGCTAATACCTCAGGTTAGTCAGCTGGGTGCAGCTGCTCAGAAGTATCAGACTGCAATTCAAAATGCATCATCTAACTTGCCTACTCCAGAGTTACAAAATAATTGCAACATGTTTGTGGGCTCAGCTAGACAATTGGCCAAGGCATTGGAAGTGCCATTAGTAAATGACTTGGGATATACGAAGAGATACGTTCGGTGCCTTCAGATATCAGAAGTCGTCAATAGTATGAAGGACTTGATAGATTACAGCCAAGAAACTACGACTGGGCCGATTGAAAGTTTGGCAAAGTTTCCGCGGAAGACGAATGCTTCACCAGGCTTCCACAGCCAAGCTCAAAATATGGAGCAACAATTACCTCAGCCGCAGCAAACAATTGATCAAAACGCAAATGGCGACCAAAGCTCTGCTCAGGCTGCTTCGATGCAGCTTGCTGCTAACAATGGTGTTCCAAGTGCAAATAACGCTGGTAATCCAGCGTCAACCTCATCCCCTGCCAGTACCATCGTTGGGTTACTCCACCAGAACTCCATGAACTCCAGACAGCAGAACTCTATCAACAGCGCTGGCAGCCCTTATGCCGGAAATTCTGCGCAAATATCGTCTCCAGGTTCCTCCACGATTGCTCAGGCACAAGCTAACTCCTCGTTCCAATCGCCTACATTGTCCTCACCTAACAATCACCCACAATCATCAATTGGCACTGCAACAACTACTAATCACATGAGTGCCACTAATTCTCCGGCAAATGTTCCCTTGCAACAGCCAACACAATCCTCAGATGCTGATCAAAACGATTCCCAAAGTTCCGTACAAAAGATTATTCAGGAATACATGATGTCGAATCATCTAAACGGGATGAACACAATGACTGGTGTATCCTCTATAGGAGATGAGGCGAAAACTGTTAACGGGATGTTGCCAGGAAACAACATTATGAGTCTCAATGGACGGAATGGACTCATCGGGACTGGAACTGCTAATGGCGTTCCTGGGATCAGGAATGCGGGATATGGCTCAATGAATGGGGGACTTGCTCAGGCTTCTATGGTCAATGGAATGAAGTCAGCAATGGGAAATAACTCGATTTCGAACGGGAGAATCGGGATGGCGTCATTGGCTCGAGGACAGAGCATAAATCATCAAGATTTGGGGGACCAGCTTCTTAATGGACTTGGAGCTGTGAATGGATTTAATAATCTTCAATTCGATTATTGA 2727 44.77 MVPSGPSTPIGGAQSVSPSLLRSNSGMMGAQGGLPSQSAFPSLVSPRTQFSSMNMLGNTPSMSSLLNQSFGNGVPNSGPSGLGNSQRGVMDPGSESDPFSLVGNGVNFNNTPSSLVTSNTANPGSSSQVSGQQFSNHSSSQIIPNQQQPQQIEPQNFQHGQHSMQQFATSNNIQQAQQQQQQQFQRGSLCGVGPIKLEPQMNNNDLQAQQLQQQQQLQSMRNLGPVKLEPQQLQSMRNMGPVKLEPQQSDQSLFLQQQHQHQQQQQQQQQQQQLLSMSRQSSQAAAAQINLLQQQRLLQFQHQQQLLKAIPQQRPHLPQQFQQQNLPLRSPVKSVYEPGMCARRLTSYMCQQQQRPEDNNIEFWRKFVADYFAPHAKKKWCVSMYGNGRQTTGVFPQDVWHCEICNRKPGRGFEATFEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLPTPELQNNCNMFVGSARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSQETTTGPIESLAKFPRKTNASPGFHSQAQNMEQQLPQPQQTIDQNANGDQSSAQAASMQLAANNGVPSANNAGNPASTSSPASTIVGLLHQNSMNSRQQNSINSAGSPYAGNSAQISSPGSSTIAQAQANSSFQSPTLSSPNNHPQSSIGTATTTNHMSATNSPANVPLQQPTQSSDADQNDSQSSVQKIIQEYMMSNHLNGMNTMTGVSSIGDEAKTVNGMLPGNNIMSLNGRNGLIGTGTANGVPGIRNAGYGSMNGGLAQASMVNGMKSAMGNNSISNGRIGMASLARGQSINHQDLGDQLLNGLGAVNGFNNLQFDY 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9877436 9888255 + CcPI632755_08g004210.1 Cco08g0421 184895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0421 908 MobiDBLite consensus disorder prediction 100 182 - -
Cco08g0421 908 Coils Coil 203 223 - -
Cco08g0421 908 PANTHER LIM DOMAIN-BINDING PROTEIN 231 904 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Cco08g0421 908 MobiDBLite consensus disorder prediction 1 182 - -
Cco08g0421 908 MobiDBLite consensus disorder prediction 243 274 - -
Cco08g0421 908 MobiDBLite consensus disorder prediction 681 773 - -
Cco08g0421 908 MobiDBLite consensus disorder prediction 8 91 - -
Cco08g0421 908 MobiDBLite consensus disorder prediction 616 644 - -
Cco08g0421 908 Pfam LIM-domain binding protein 344 598 IPR029005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0946 Cco-Chr5:8290762 Cco08g0421 Cco-Chr8:9877436 2.60E-93 dispersed
Cco08g0421 Cco-Chr8:9877436 Cco08g0780 Cco-Chr8:19601603 2.20E-276 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0421 - - - 0.0